PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G080168_P02
Common NameZEAMMB73_435335, Zm.18099
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 328aa    MW: 34261.9 Da    PI: 8.9951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G080168_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.7e-09266313455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  GRMZM2G080168_P02 266 SHSLAERVRREKIGERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 313
                        8*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.46E-10260317No hitNo description
SuperFamilySSF474593.14E-15260319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-15262317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.516262312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6266313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAHDGFLGGF HELSWPLVHA AAAGAAPFDP LLVHVPHALM GAGAGWQHEA AVGAIVPSQS  60
QSQSPPPPPS SLAAAAVGGA DAVEAAMMEQ LASRLGVSVP SPPSSRYVSC HSTPVAPCVL  120
AGDAERAERL SCFPASGRKL SRVASSQSLL REQAPAPAPA PSPGAAAKQH AGDGACDGPC  180
RKRKASGTSS KQSKAKEAVT TAPPESRETA ETRAKKCKLS TDEERKPAAG EGWRGSGKGK  240
ELVAADAEPP KDYIHVRARR GQATDSHSLA ERVRREKIGE RMKLLQDLVP GCSKVTGKAV  300
MLDEIINYVQ SLQRQVEVRR VCLLCIGH
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G080168
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G080168_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370220.0BT037022.1 Zea mays full-length cDNA clone ZM_BFb0151M19 mRNA, complete cds.
GenBankKJ7268660.0KJ726866.1 Zea mays clone pUT3407 bHLH transcription factor (bHLH141) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136483.10.0uncharacterized protein LOC100216597
TrEMBLK7UA820.0K7UA82_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G080168_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.12e-42bHLH family protein