PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G078077_P01
Common NameZEAMMB73_102369, Zm.129784
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 218aa    MW: 22969.7 Da    PI: 10.5719
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G078077_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.58.4e-37342172126
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..........seceaesssssas 83 
                        agkk   +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a          s++++++ +++++
  GRMZM2G078077_P01  34 AGKKEGGKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSIVAATGSGTTPAvfvsssapstSSSSHSHYQQQQQ 125
                        899*************************************************************5555533332222111122222222222 PP

                TCP  84 nsssg..................................................kaaksaakskksqksaasalnlak.esrakararare 124
                        ++  +                                                  +a    + + ++q++++++lnl +  s a  ra+a e
  GRMZM2G078077_P01 126 QQ--QatvvvlgkrpreeggdaaaasvpafwaaaprttaaadaswgfspleaqqaAAGYVPMAQAQQQQHHHHHLNLLAaLSGAARRAEAAE 215
                        22..1357788888888888888888888888888888888888888888876542222222333333333334444443666777777777 PP

                TCP 125 rt 126
                        +t
  GRMZM2G078077_P01 216 ET 217
                        66 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-3239128IPR005333Transcription factor, TCP
PROSITE profilePS5136927.0324094IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MATTRDVSAA SAAAMFHVYQ PMPMPSTAAA PAKAGKKEGG KDRHSKVNGR GRRVRMPIVC  60
AARVFQLTRE LGLKSDGQTI EWLLRQAEPS IVAATGSGTT PAVFVSSSAP STSSSSHSHY  120
QQQQQQQQAT VVVLGKRPRE EGGDAAAASV PAFWAAAPRT TAAADASWGF SPLEAQQAAA  180
GYVPMAQAQQ QQHHHHHLNL LAALSGAARR AEAAEETR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G078077
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G078077_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9768990.0EU976899.1 Zea mays clone 993196 TCP-domain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266729.21e-155uncharacterized protein LOC100284201
SwissprotQ9FMX29e-42TCP7_ARATH; Transcription factor TCP7
TrEMBLK7TYK61e-155K7TYK6_MAIZE; TCP-domain protein
STRINGGRMZM2G078077_P011e-156(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.16e-36TCP family protein