PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G076636_P01
Common Namecl6102_1a, ZEAMMB73_729450
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 611aa    MW: 66406.8 Da    PI: 7.3115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G076636_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12457503455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  GRMZM2G076636_P01 457 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 503
                        799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-5160245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831453502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.70E-15456507No hitNo description
SuperFamilySSF474596.15E-19456520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10457503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-18457516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MVMKMEHEDN GAIGGTDGTW TEDDRALGAA VLGADAFAYL TKGGGAISEG LVATSLPGDL  60
QNKLQELVES ESPGTSWNYA IFWQLSRTKS GDLVLGWGDG CCREPRDGEL GAAASAGSED  120
SKQRMRKRAL QRLHIAFGVA DEEDYSPGID QVTDTEMFFL ASMYFAFPRH AGGPGQAFAA  180
GIPIWVPNSE RKVVPANYCY RGFLANAAGF RTIVLVPFES GVLELGSTQH IAESSGTVQT  240
VRSVFAGTSG NKSAVQRHEA ERSPGLAKIF GKDLNLGRPS VGLAVGVSNS KVDERTWEQR  300
SAVGGTSLLP SVQKGLQNFS WSQARGLNSH QQKFGNGVLI VSNNEGAHRN NGAVDSPSAA  360
QFQLQKAPQL QKLSVVQKTP QLVNQQPMQA QVPRQIDFSA GSSSKPGVLV TRAGVLDGES  420
AEVDGLCKEE GPPPVMEDRR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV  480
PNISKMDKAS LLGDAITYIT DLQKKLKEME TERERLLESG MVDPRERAPR PEVDIQVVQD  540
EVLVRVMSPM ENHPVKKVFQ AFEEAEVRVG ESKVTSNNNG TAVHSFIIKC PGTEQQTREK  600
VIAAMSRAMS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-23602459192Transcription factor MYC3
4rqw_B7e-23602459192Transcription factor MYC3
4rru_A2e-226024148227Transcription factor MYC3
4rs9_A7e-23602459192Transcription factor MYC3
4ywc_A2e-226024148227Transcription factor MYC3
4ywc_B2e-226024148227Transcription factor MYC3
4yz6_A7e-23602459192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1438446RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.254630.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G076636
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G076636_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539680.0BT053968.1 Zea mays full-length cDNA clone ZM_BFc0083E19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454874.10.0hypothetical protein SORBIDRAFT_03g000570
TrEMBLK7VBN70.0K7VBN7_MAIZE; Putative HLH DNA-binding domain superfamily protein isoform 1
STRINGGRMZM2G076636_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25311123
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-131bHLH family protein