PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G074438_P01
Common NameLOC103629727, Zm.130724
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 370aa    MW: 39510.8 Da    PI: 9.0309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G074438_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-09167214455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  GRMZM2G074438_P01 167 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 214
                        8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.90E-10161218No hitNo description
SuperFamilySSF474594.97E-15161230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-14163228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MRHASPPQEL PAAGREIQAA LAPANGNAAG ARGGGGSFTA LLGLPTPQAM ELLLPRTTPP  60
ALALAPAAAP APTPTFPSDP HLVDRAGRFS TFAPPSPPSP SPTQQPPPPP PAAVAGKRKA  120
DPVDRASKGK AAKKGKTAEE KPAAAGGEDE KPAYVHVRAR RGQATDSHSL AERARREKIN  180
ARMELLKELV PGCSKVSGTA LVLDEIINHV QSLQRQVEYL SMRLATVNPR GDFGGLDSFL  240
TTECGRIASF NCKNGIDLEQ VTWPEMGVHG ARQLMQLQQQ FWHGDLAHPH QVASQWEKRG  300
DGHPPVFSNS SPSLFGYDLT SSGKPCTQSY ITFLNEFSCL SLTSHITAWL APQLLSLSLS  360
RQCSLENKVY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.188640.0meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G074438
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G074438_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407290.0BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649066.10.0PREDICTED: transcription factor bHLH48-like isoform X1
SwissprotQ8VZ021e-63BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A096R3H60.0A0A096R3H6_MAIZE; Uncharacterized protein
STRINGGRMZM2G074438_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.12e-49bHLH family protein