PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G074032_P01
Common NameLOC103639380, ZEAMMB73_608286, Zm.130314
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 448aa    MW: 46826.8 Da    PI: 9.9629
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G074032_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.6e-0782104123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C++Cg+ F r  nL+ H r+H
  GRMZM2G074032_P01  82 YVCEICGQGFQREQNLQMHRRRH 104
                        9*********************9 PP

2zf-C2H210.70.0017185207123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C  C k +  +s++k H++t+
  GRMZM2G074032_P01 185 WVCARCAKGYAVQSDYKAHLKTC 207
                        58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-581104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.53E-781104No hitNo description
PROSITE profilePS5015711.75982104IPR007087Zinc finger, C2H2
SMARTSM003556.5E-482104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM00355110149179IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.53E-7180205No hitNo description
SMARTSM00355270185212IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MALLVKSHQQ MLVSSSTTSS SSPSSASQQR HPPPPPPPSS SCLTDQQQPS PAKRKRRPPG  60
TPDPDAEVVA LSPRTLLESD RYVCEICGQG FQREQNLQMH RRRHKVPWRL VKRAPPPAGG  120
GEDSAGANNS STAGTGVGGG GGGPRKRVFV CPEPSCLHHD PAHALGDLVG IKKHFRRKHG  180
GRRQWVCARC AKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACNSSRIRG  240
EAVAVAVPAP PSALPVIRPA VPRHQPTVAP APPPPELQLL PASAAASAPL ASTPTASLST  300
TTNASQEQEP HAAAAATTTT KLQLSIGPTV IAPGADAAAA TASAVGEEDD SEAKELRRAM  360
KEKAAADAAR ARARGEAAAA ERALDEARRA RQRARADLEK ACALRDHAAR LLAQVTCHAC  420
RQRSLAVAGG PAVACDSIIR GGGGEAGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-16181235357Zinc finger protein JACKDAW
5b3h_F1e-16181235357Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G074032
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression levels gradually decrease with aging in both the shoot and root vasculature. {ECO:0000269|PubMed:16813575}.
UniprotTISSUE SPECIFICITY: Mainly expressed in the endodermis, the gravity-sensing tissue in inflorescence stems. Mostly present in stems and flowers, and, to a lower extent, in seedlings, hypocotyls, roots and the shoot apical meristem (SAM). {ECO:0000269|PubMed:16813575}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G074032_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0871650.0BT087165.2 Zea mays full-length cDNA clone ZM_BFb0183A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660353.10.0protein indeterminate-domain 16
SwissprotF4IPE31e-112IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A3L6DEH20.0A0A3L6DEH2_MAIZE; Protein SHOOT GRAVITROPISM 5
TrEMBLK7VNU90.0K7VNU9_MAIZE; Protein SHOOT GRAVITROPISM 5
STRINGGRMZM2G074032_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.13e-87C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAO╬ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]