PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G065496_P05
Common NameLOC100193780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 282aa    MW: 31530.1 Da    PI: 6.1432
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G065496_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.9e-17481261497
                        T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        +r+++p kfa++++g+   + +  l+++s+ ++W v +  +k++++ +l +GW++F+ka++L+e+D ++F  +g+s+f   v vf
  GRMZM2G065496_P05  48 HRISVPEKFAKNFKGQI--TEEFHLKSPSSaETWHVGV--EKHGDKLFLVSGWENFAKAHELEENDLLLFACSGNSSF--EVLVF 126
                        789*******9998884..4579999*7776*******..********************************999999..55555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-2031131IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.25335129IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-2037131IPR015300DNA-binding pseudobarrel domain
CDDcd100173.59E-1737126No hitNo description
SMARTSM010192.9E-1138129IPR003340B3 DNA binding domain
PfamPF023627.5E-1448125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MQQEHAQPSM VGAKGCERCR DWQEHYYWEH MDASKIRFFR CMTGDFAHRI SVPEKFAKNF  60
KGQITEEFHL KSPSSAETWH VGVEKHGDKL FLVSGWENFA KAHELEENDL LLFACSGNSS  120
FEVLVFGASG CEKVSSLFGS GLGPDMGKQF NDVVRRHGVH HSVTVSDSED TVAPSQLVRS  180
PRNALPLKEP SGKARPSKYE SPNSSNFIVR HVATGKEGTD DEYANSNYYY SLSANRLGDE  240
EKEEIIGLAP HPTEQSCICD PSEEKPCSAQ KQLSDHPKQV CC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.344000.0meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G065496
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G065496_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9596940.0EU959694.1 Zea mays clone 219410 B3 DNA binding domain containing protein mRNA, complete cds.
GenBankBT0361380.0BT036138.1 Zea mays full-length cDNA clone ZM_BFb0097O01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132338.10.0uncharacterized protein LOC100193780
SwissprotQ2QMT26e-70Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A096QXL90.0A0A096QXL9_MAIZE; Uncharacterized protein
STRINGGRMZM2G065496_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-23B3 family protein