PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G065496_P04
Common NameLOC100193780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 365aa    MW: 41726.2 Da    PI: 8.8765
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G065496_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-16481261497
                        T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        +r+++p kfa++++g+   + +  l+++s+ ++W v +  +k++++ +l +GW++F+ka++L+e+D ++F  +g+s+f   v vf
  GRMZM2G065496_P04  48 HRISVPEKFAKNFKGQI--TEEFHLKSPSSaETWHVGV--EKHGDKLFLVSGWENFAKAHELEENDLLLFACSGNSSF--EVLVF 126
                        789*******9998884..4579999*7776*******..********************************999999..55555 PP

2B343.27.1e-14259356299
                        EEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                 B3   2 fkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                        ++ l +++v ++ ++l++p kfa++h g+ +    ++l+   + ++W v + y  +  r++      +F ++n+L egD++vF+l++  ++ 
  GRMZM2G065496_P04 259 VTLLRKNHVQRRnNCLIIPSKFAADHLGERAH--NIILRRpNRKEKWHVSY-YHSRHTRCFQNLALFKFTRENKLHEGDICVFELMKGeRRV 347
                        555666666665488***********666444..69999945559******.655556777888899*****************99666999 PP

                        ..EEEEE-S CS
                 B3  91 elvvkvfrk 99 
                        +++v+v+rk
  GRMZM2G065496_P04 348 TMTVHVVRK 356
                        9***99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-2031131IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.25335129IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-1937131IPR015300DNA-binding pseudobarrel domain
CDDcd100173.20E-1537126No hitNo description
SMARTSM010192.9E-1138129IPR003340B3 DNA binding domain
PfamPF023621.3E-1348125IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-18251356IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-16252356IPR015300DNA-binding pseudobarrel domain
CDDcd100172.25E-12256355No hitNo description
SMARTSM010199.1E-7258357IPR003340B3 DNA binding domain
PfamPF023622.9E-12258356IPR003340B3 DNA binding domain
PROSITE profilePS5086310.052259357IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MQQEHAQPSM VGAKGCERCR DWQEHYYWEH MDASKIRFFR CMTGDFAHRI SVPEKFAKNF  60
KGQITEEFHL KSPSSAETWH VGVEKHGDKL FLVSGWENFA KAHELEENDL LLFACSGNSS  120
FEVLVFGASG CEKVSSLFGS GLGPDMGKQF NDVVRRHGVH HSVTVSDSED TVAPSQLVRS  180
PRNALPLKEP SGKARPSKYE SPNSSNFIVR HVATGKEGTD DEYANSNYYY SLSANRLGDE  240
EKEEIIGLAP IRPNNPVFVT LLRKNHVQRR NNCLIIPSKF AADHLGERAH NIILRRPNRK  300
EKWHVSYYHS RHTRCFQNLA LFKFTRENKL HEGDICVFEL MKGERRVTMT VHVVRKANGR  360
FILVV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.344000.0meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G065496
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G065496_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9596940.0EU959694.1 Zea mays clone 219410 B3 DNA binding domain containing protein mRNA, complete cds.
GenBankBT0361380.0BT036138.1 Zea mays full-length cDNA clone ZM_BFb0097O01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132338.10.0uncharacterized protein LOC100193780
SwissprotQ2QMT21e-122Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLB4FGA00.0B4FGA0_MAIZE; Uncharacterized protein
STRINGGRMZM2G065496_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Representative plantOGRP6299819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-29B3 family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]