PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G064638_P01
Common NamebHLH139, LOC100381548
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 393aa    MW: 41425.9 Da    PI: 7.822
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G064638_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-13121170355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h ++Er+RR+++N+ +  Lr+l+P     + k+ + a+i   +v+YIk+Lq
  GRMZM2G064638_P01 121 ISHVAVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 170
                        589************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.078118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-17119195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-13120181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.57E-14120174No hitNo description
PfamPF000102.5E-10122170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-12124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGDGQCELVV DNHCQLRHRL DLSGAEDLFS VIGTWEERTD DGGAGDGGGG GSSAPAMRAY  60
RQISCSAGAV AATRLTGKSR RRTGEEEEEK GSGGSAPGPA HKKHNKAGSA VTDDDEGAPK  120
ISHVAVERNR RKQMNEHLTV LRSLMPCFYV KRGDQASIIG GVVDYIKELQ QVLRSLEAKK  180
HRKAYAEQVL SPRPSAGGVS TSVSAASPRH LAVKSVAPLS PRMAVPISPR TPTPGSPYKA  240
AASGVAGCCR LPLLPPYMLS SSAAAAAASY SHDQQQHYST QTTTYLPTLD SLVTELATQQ  300
AACRPAAAAA GLALPDVKVE FAGPNLVLKT VSHRAPGQAL KIIAALESLS LQILHVSVSA  360
VDDTMLHSFT IKIGIECELS AEELVQEIQQ TLL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G064638
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G064638_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0615850.0BT061585.1 Zea mays full-length cDNA clone ZM_BFb0161H07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167846.10.0putative HLH DNA-binding domain superfamily protein
SwissprotQ700C72e-76SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLC0HGX90.0C0HGX9_MAIZE; BHLH transcription factor
STRINGGRMZM2G064638_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.17e-42bHLH family protein