PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G060876_P01
Common NameEREB73, F9009
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 277aa    MW: 30129.6 Da    PI: 10.8213
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G060876_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.7e-13166215154
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                        ++y GVr+ + +gr++AeIr+p +   + r++lg+f+taee a a+++a ++l+
  GRMZM2G060876_P01 166 TRYLGVRRWP-WGRYAAEIREPAT---KERHWLGTFDTAEEGAVAYDRAVRSLR 215
                        5799**9999.**********843...4**********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.22E-18166215No hitNo description
SMARTSM003804.5E-18167231IPR001471AP2/ERF domain
PfamPF008471.5E-5167215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-20167216IPR001471AP2/ERF domain
PROSITE profilePS5103217.214167225IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-15167216IPR016177DNA-binding domain
PRINTSPR003671.1E-6168179IPR001471AP2/ERF domain
PRINTSPR003671.1E-6190206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGPDLGPNPA RYIGPCRPGT KIFRAVPCLG RAFFTVLRAG PSGPAQMYTY SFGSEHLALA  60
CSAASWVVPC WPGTSLSCFG SQLVGPSQHE IESGRALPGL ANRSKAQHGP KARRASVGSC  120
WPKHGTPQFL ISAHLGLSVA VALDPSVLRL WARSLVAQPQ ADANTTRYLG VRRWPWGRYA  180
AEIREPATKE RHWLGTFDTA EEGAVAYDRA VRSLRRGLRP RRALPSTQPR CFVPHREWAR  240
PLVAAWGWTT GVLGPYSPLL GGGMVGTGVR EDRMDQL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G060876
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G060876_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6644150.0AY664415.1 Zea mays cultivar B73 locus 9009, complete sequence.
GenBankAY6644190.0AY664419.1 Zea mays cultivar Mo17 locus 9009, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156478.11e-104uncharacterized protein LOC111589793
TrEMBLQ5GAQ00.0Q5GAQ0_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G060876_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.19e-22ERF family protein
Publications ? help Back to Top
  1. Brunner S,Fengler K,Morgante M,Tingey S,Rafalski A
    Evolution of DNA sequence nonhomologies among maize inbreds.
    Plant Cell, 2005. 17(2): p. 343-60
    [PMID:15659640]