PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G060544_P01
Common Namecl63098_1(337), LOB15
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 313aa    MW: 33961.8 Da    PI: 6.6055
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G060544_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.43.1e-304108199
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqq 86 
                        +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+ll+a p ++ r++a++sl+yeA+ r+ +PvyG+vg+++++q+q
  GRMZM2G060544_P01   4 SCNGCRVLRKGCSDACTIRPCLqwiksPEAQANATVFLAKFYGRAGLLNLLAAPPADHlRPAAFRSLLYEACGRIVNPVYGSVGLLWSGQWQ 95 
                        6****************************************************987777********************************* PP

             DUF260  87 leqlkaelallke 99 
                         +q+++e++l ++
  GRMZM2G060544_P01  96 ACQAAVEAVLKGD 108
                        ******9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4363110IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-244103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDACT IRPCLQWIKS PEAQANATVF LAKFYGRAGL LNLLAAPPAD  60
HLRPAAFRSL LYEACGRIVN PVYGSVGLLW SGQWQACQAA VEAVLKGDPI VQVQVDAASD  120
ASPPLGPRRH DIRHVARDPA AAPDVLLRSS SRKRAASSST SSKHNQPGSS KRASLGKNRQ  180
RAEQEPVPMV VEHGEESAGS HDHDHDQHHR LQGSEEDTDV EAASHAHSHV SQAEPEPEPE  240
TEPQSHAPPA CSQQQANQEH QDDEDEELAL ELTLGLEPLV RQRQRPKSSR SDCDHSGLSA  300
ASSLMCLRLQ LPA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.122120.0cell culture| endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G060544
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G060544_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547640.0EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142806.10.0uncharacterized protein LOC100275184
TrEMBLB6SPU90.0B6SPU9_MAIZE; LOB domain-containing protein 42
STRINGGRMZM2G060544_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-65LOB domain-containing protein 41
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]