PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G060319_P01
Common NameLOC100286105, TCP15, ZEAMMB73_190242
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 274aa    MW: 29352.3 Da    PI: 6.0927
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G060319_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.51.2e-3474177379
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................sss 68 
                         ++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl+q+kpai+ l++                           +ss
  GRMZM2G060319_P01  74 FRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLTQSKPAIDRLVDAaaaaddpaavaasggrrptvvrgrgeGSS 165
                        689************************************************************88877777777777777777777764333 PP

                TCP  69 sasec..eaesss 79 
                        s+  c   ++s++
  GRMZM2G060319_P01 166 SS-TCccLTDSRE 177
                        33.3334222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.98575133IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-3275143IPR005333Transcription factor, TCP
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0001007developmental stagepollen development stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MPSTAAMSSS WDGYGGQIFP ADMSSFHRHQ DTLEAVFHHP PPETTTTTGL LRNDGSSPVV  60
DDGGGHAAPR RRPFRTDRHS KIRTAQGVRD RRMRLSVGVA REFFALQDRL GFDKASKTVN  120
WLLTQSKPAI DRLVDAAAAA DDPAAVAASG GRRPTVVRGR GEGSSSSTCC CLTDSREAAE  180
EATGNGRSRG GPDDGPPAAL LEGHGGCGEL GWIMSGAPTA AVATTTTTTP QQPDGHEYYY  240
QYCLQLEEMM RCSNDEGETT PGDFLYGMQT RDRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1480133154Putative transcription factor PCF6
5zkt_B3e-1480133154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1272590.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G060319
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G060319_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634570.0BT063457.1 Zea mays full-length cDNA clone ZM_BFc0065H12 mRNA, complete cds.
GenBankEU9756360.0EU975636.1 Zea mays clone 494952 teosinte branched1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152465.20.0teosinte branched1 protein
TrEMBLC0P5880.0C0P588_MAIZE; TCP transcription factor
STRINGGRMZM2G060319_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-25TCP family protein