PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G056099_P02
Common Namepco101600(436), ZEAMMB73_241924
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 335aa    MW: 37437.3 Da    PI: 9.3488
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G056099_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-105092446
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46
                        k+ rr+++NReAAr+sR+RKka++++Le    +L +  ++L+
  GRMZM2G056099_P02 50 QKVLRRLAQNREAARKSRLRKKAYVQQLESSKLKLASLEQELQ 92
                       5899*************************86666666555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-847110IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.2E-84794No hitNo description
PROSITE profilePS502179.2894993IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.88E-75194No hitNo description
PfamPF001702.0E-75192IPR004827Basic-leucine zipper domain
PROSITE patternPS0003605469IPR004827Basic-leucine zipper domain
PfamPF141442.7E-32133208IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MADASSRTDT STVVDMDDKN QRLENGQSGA MVPASNSSDR SDRSDKPMDQ KVLRRLAQNR  60
EAARKSRLRK KAYVQQLESS KLKLASLEQE LQKARQQGIF ISSSGDQTHT MSGNGAMTFD  120
LEYSRWQEEQ NKQINELRTA VNAHASDSDL RLIVDGIMAH YDEIFRLKGI AAKADVFHIL  180
SGMWKTSAER CFLWLGGFRS SELLKLLVNQ LEPLTEQQLM GLSNLQQSSQ QAEDALSQGM  240
EALQQSLAET LAGSLGPSGS SGNVANYMGQ MAMAMGKLGT LENFLRQADN LRQQTLHQMQ  300
RILTIRQAAR ALLAIHDYFS RLRALSSLWL ARPRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1190800.0embryo| endosperm| leaf| meristem| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G056099
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G056099_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0554460.0BT055446.1 Zea mays full-length cDNA clone ZM_BFb0202I10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658211.10.0bZIP transcription factor isoform X1
SwissprotQ6IVC30.0TGA22_ORYSJ; Transcription factor TGA2.2
TrEMBLB8A1K40.0B8A1K4_MAIZE; BZIP transcription factor
STRINGGRMZM2G056099_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-143TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Chern M,Fitzgerald HA,Canlas PE,Navarre DA,Ronald PC
    Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light.
    Mol. Plant Microbe Interact., 2005. 18(6): p. 511-20
    [PMID:15986920]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]