PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G055024_P01
Common NameZEAMMB73_060356
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 420aa    MW: 45495.6 Da    PI: 11.3897
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G055024_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.32e-32147223366
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............s 66 
                         ++d hski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl q+kpai+ l++               
  GRMZM2G055024_P01 147 FRTDWHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLAQSKPAIDRLNRArlgserqfvappnR 223
                        689***********************************************************966666655555442 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136932.359148206IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-28148216IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MATMHEPAAA AGPIRTHPIS RFLGAPWGCG GCNGCATTEP TRVGGLIRQG LDHDGDGRQA  60
SARRLCARKN RVSVAAVVPP LTPPSPSSPL PDPDNHTAQI RIHLVQHDRG YRISASEGER  120
ELPSNGSPPV VDDAGVQAAT VLRKRPFRTD WHSKIRTAQG VRDRRMRLSV GVAREFFALQ  180
DRLGFDKASK TVNWLLAQSK PAIDRLNRAR LGSERQFVAP PNRTRPEQFI APHGLSKRAV  240
SAEEEVAGVA ARKGCVRQTG GDADETKKVT FVEVGGDVPL KLSRRNSLAA HVPVTRSRRN  300
SLGADVLVRQ SSRNSLCAEA QDCELRSQVT CSPVVAKPRG KSVQAGSVEV GAVVPLRRSR  360
RNSLRAAESE EVQVVVFVDR KRKCKNQEND KGVALSAQVG ASSRVTRRSS HALSSLKPRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.398041e-128tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G055024
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G055024_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9614981e-126EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds.
GenBankKJ7277621e-126KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6PNG71e-160A0A1D6PNG7_MAIZE; Uncharacterized protein
TrEMBLA0A3L6F1L71e-160A0A3L6F1L7_MAIZE; Transcription factor TCP18
STRINGGRMZM2G055024_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.24e-23TCP family protein