PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G049194_P02
Common NameMYBR67, umc2585
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 630aa    MW: 70050.6 Da    PI: 6.5644
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G049194_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-08513560347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        +WT  E  +lvd+v+++G g W+ I +        Rt  ++k++w+++
  GRMZM2G049194_P02 513 AWTLSEVVKLVDGVARYGAGKWSEIRKLSFasySYRTSVDLKDKWRNL 560
                        7************************9999999*99***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.154506565IPR017930Myb domain
SuperFamilySSF466891.33E-14508564IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-12508563IPR009057Homeodomain-like
SMARTSM007172.3E-8510563IPR001005SANT/Myb domain
CDDcd116605.41E-18512562No hitNo description
PfamPF002491.1E-5513560IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MKFDLSMEMD DSHGTMVNKS EENDFEKKGT SDPVVYQLVR VEGDGTLVPA TEDDVLQFEH  60
FLHNEKVDLP PIEDADHVEE FFNNDCMLLK KPDLEDGSSK LETVEAHTQK LGANLEENIL  120
QSLDDSLSPP SDFRIHSQHS DKLLTEQGAN VTRQDNASTE TTKSTVLNDS CCAEKYKADA  180
CSRSVCDTST DPSVSGVNSS MPDFSILRGE VCLDDLTIRE LQEAFRATFG RQTNVKDKIW  240
LKRRITMGLT NSYDVPSSGC VVKDYKIVGK DAKNDMSDMD ERAKTGLRAT SVVIYPGNEG  300
DSPSSSYYQS EDQEDSSKRV PIHNDEPQGN LLGEQCTDKR TRKPTKRYIE ELSDIETHDS  360
TVKNSSPAKR PAHDELLMNP RVAPFNETGS LGTIYPTRKD TFGGFSVHVP YVSRMRRGRP  420
RKDFISFAVT IYDKGPSVEP KGIQPSVEMI LVKDGDKGNH LRKVPEVPLK VSSENEHAEA  480
VDSKGVRNLQ AKVCSAVSKP KIKHGLTRKH HRAWTLSEVV KLVDGVARYG AGKWSEIRKL  540
SFASYSYRTS VDLKDKWRNL IRATQTQLPA QKDGACPRKT NPSIIPIPPS ILLRVKELHE  600
LQSQGGGFTA PVKFSGQDGK VLQGKGSGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415421RRGRPRK
2415422RRGRPRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.376200.0embryo| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G049194
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G049194_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668440.0BT066844.1 Zea mays full-length cDNA clone ZM_BFb0074H17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169431.10.0uncharacterized LOC100383302
RefseqXP_008644053.10.0uncharacterized protein LOC100383302 isoform X1
RefseqXP_020409096.10.0uncharacterized protein LOC100383302 isoform X1
RefseqXP_020409097.10.0uncharacterized protein LOC100383302 isoform X1
TrEMBLC0PEX50.0C0PEX5_MAIZE; MYB-related transcription factor
STRINGGRMZM2G049194_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-81TRF-like 6