PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G046829_P01
Common NameLOC100283120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 176aa    MW: 18573.2 Da    PI: 7.3411
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G046829_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY151.86.2e-47161726167
              YABBY   6 sseqvCyvqCnfCntilavsvPsts...lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 
                         +e++ yvqC+fC til+v vP      l+k+v+v+CG C  +lsv l       +a+ +    l + ++e  +v+    +s +++ e   +
  GRMZM2G046829_P01  16 LPERLGYVQCKFCATILLVGVPIGGslqLLKTVAVQCGSCCGILSVALPPDEAPAPASVE----LLPLMQEAGGVDPPPRDSDESSGEDRGE 103
                        689*******************8642226899****************999988888876....5555555555555544444333333333 PP

              YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167
                        ++++ +     d++++  p v++PP ++qr Psayn+fikeeiqrika +P i+h+eafsaa+knWah+P+i 
  GRMZM2G046829_P01 104 TTEAAT---VADNHAA-FPAVNKPPLRKQRTPSAYNCFIKEEIQRIKARDPGITHKEAFSAASKNWAHLPRIQ 172
                        333322...2333333.578**************************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.8E-4617172IPR006780YABBY protein
SuperFamilySSF470951.7E-7121173IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.1E-5128173IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSSSSSPRHP CFGAALPERL GYVQCKFCAT ILLVGVPIGG SLQLLKTVAV QCGSCCGILS  60
VALPPDEAPA PASVELLPLM QEAGGVDPPP RDSDESSGED RGETTEAATV ADNHAAFPAV  120
NKPPLRKQRT PSAYNCFIKE EIQRIKARDP GITHKEAFSA ASKNWAHLPR IQKTGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1287770.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G046829
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G046829_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9634890.0EU963489.1 Zea mays clone 263245 axial regulator YABBY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651472.11e-128PREDICTED: axial regulator YABBY2 isoform X1
SwissprotA2PZN84e-52YAB7_ORYSJ; Protein YABBY 7
TrEMBLA0A096QJU31e-128A0A096QJU3_MAIZE; Uncharacterized protein
STRINGGRMZM2G046829_P011e-127(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1397344
MonocotsOGMP136252831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.13e-35YABBY family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]