PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G046438_P01
Common NameLOC100382037, MYBR90
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 205aa    MW: 23994.1 Da    PI: 10.3759
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G046438_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08119167248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                         rWT  E e+l+++v ++G g+W++  +++     Rt+ ++k++w+++l
  GRMZM2G046438_P01 119 SRWTSKEVERLARGVSRFGVGQWTLLKQEFFksSIRTAVNLKDKWRNLL 167
                        59****************************99988************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.933113171IPR017930Myb domain
SuperFamilySSF466899.72E-14115194IPR009057Homeodomain-like
SMARTSM007174.9E-5117169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-11119168IPR009057Homeodomain-like
PfamPF002492.1E-6120167IPR001005SANT/Myb domain
CDDcd116601.83E-18120168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEPAPTEQDY GFLGDLQLST TIDSPHILQI DNRGVRDEHT VMILQLLEGP QDETNLDDWL  60
SGDLHPSPLL ETNAHYQPRC RKSGRRGARR RRTSPWDPMF FERPVSREYS TAKGRKNNSR  120
WTSKEVERLA RGVSRFGVGQ WTLLKQEFFK SSIRTAVNLK DKWRNLLKGY QENSQKSTLL  180
YLEPSLVEKI RNLAAKQPYP YRRHR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.388420.0meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G046438
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G046438_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0629610.0BT062961.1 Zea mays full-length cDNA clone ZM_BFc0013B08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168273.11e-152uncharacterized protein LOC100382037
TrEMBLC0P3U21e-150C0P3U2_MAIZE; MYB-related transcription factor
STRINGGRMZM2G046438_P011e-151(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.26e-16TRF-like 3