PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G042893_P02
Common NameLOC100193646
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 274aa    MW: 29600.6 Da    PI: 5.0142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G042893_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-1393136755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +Er RR+++N+++  Lr+++P+      +K++Ka+i++ A+ +I +Lq
  GRMZM2G042893_P02  93 DMERTRRRKLNERLYALRSVVPNI-----TKMDKASIVRDAIAHIEHLQ 136
                        69*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.54886135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1689150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1592141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.31E-1593140No hitNo description
PfamPF000101.6E-1093136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1594150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEADSMVAMG CGGFYWQSPP RFLLEPLDLA DIVDSMYVPT NEADEPVSGL CSSNRPAEDY  60
SSSAEGANSC SAAVVPSPPP PPGVTTTTTR NMDMERTRRR KLNERLYALR SVVPNITKMD  120
KASIVRDAIA HIEHLQEQER RLLAEISVLQ SSDDGTAAAA AVKTEDAAAT GGAAYDVDSV  180
PWRKKPRAVP LPSVYFTDNP TSSISSSPPV RILEVQVSQA GERVAVVSLW CSRGRDAVGK  240
ICLALEPLRL RVVTATITAR GDTVFHTLFV ELLN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.239560.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G042893
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G042893_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0359710.0BT035971.1 Zea mays full-length cDNA clone ZM_BFb0090D10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008667199.11e-176PREDICTED: uncharacterized protein LOC100193646 isoform X2
RefseqXP_008667200.11e-176PREDICTED: uncharacterized protein LOC100193646 isoform X3
TrEMBLA0A096QH520.0A0A096QH52_MAIZE; Uncharacterized protein
STRINGGRMZM2G042893_P051e-173(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.32e-37bHLH family protein