PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G030280_P01
Common NameLOC100193779, ZEAMMB73_273664
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 322aa    MW: 35764.1 Da    PI: 8.9772
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G030280_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.51.9e-104585545
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                       k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  GRMZM2G030280_P01 45 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 85
                       788*************************9877777766555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.0E-83588No hitNo description
SMARTSM003382.4E-841104IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384387IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-74588No hitNo description
PfamPF001705.4E-74585IPR004827Basic-leucine zipper domain
PROSITE patternPS0003604863IPR004827Basic-leucine zipper domain
PfamPF141446.6E-34127202IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0001007developmental stagepollen development stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MADASPRTET STDDTDDNNG LEPGRGGLVA SDSSDRSKDK HGDQKTLRRL AQNREAARKS  60
RLRKKAYVQQ LENSRLKLTQ LEQELQRARQ QGIFISSSVD QSHSMSGNGA LAFDMEYARW  120
LEEHNRQISE LRAGVSAHAS DTDLRSVVDK IMSHYDEIFR LKGNAAKADV FHVLSGMWKT  180
PAERCFLWLG GFRPSEVLKL LSTQLEPLTE QQLSGISNLQ QSSQQAEDAL SQGMEALQQS  240
LAETLAGSLS SSGSTGNVAN YMGQMAMAMG KLGTLENFLR QTLQQMQRIL TTRQSARALL  300
VISDYSSRLR ALSSLWLARP KE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.286770.0cell culture| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G030280
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G030280_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9624230.0EU962423.1 Zea mays clone 242526 transcription factor HBP-1b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008654394.10.0putative bZIP transcription factor superfamily protein isoform X1
SwissprotP239230.0HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBLB6TBQ80.0B6TBQ8_MAIZE; Transcription factor HBP-1b
STRINGGRMZM2G030280_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-140TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]