PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G027563_P02
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 316aa    MW: 32049.2 Da    PI: 11.0854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G027563_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-10128173555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+++Er RR+ri +++  L+el+ +a      K +Ka++L + ++Y+k Lq
  GRMZM2G027563_P02 128 HSIAERLRRERIAERMKALQELVSNA-----NKTDKASMLDEIIDYVKFLQ 173
                        99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.49E-12121176No hitNo description
SuperFamilySSF474593.01E-15121181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.647123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14125180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-8128173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-12129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAGTGIRGGR EGAGWRRAGG GDGTPAAALW WGVVRRLVAG RGEIAGSVFG GSFVGSLQQQ  60
QHFQSHHPQQ QTAPPLPGQG FGGGGRGGGR AGAPGGMSQP QAGAAVGGAA APPRQRVRAR  120
RGQATDPHSI AERLRRERIA ERMKALQELV SNANKTDKAS MLDEIIDYVK FLQLQVLSMS  180
RLGGAARSRQ GRDGAAAAAG SDGLAVTEQQ VAKLMEEDMG TAMQYLQGKG LCLMPVSLAA  240
AISSATCHMR PPVGGPGVAA GHHMAAMRLP HVTNGGAGAD DVSASPSMSM LTTPSAMPNG  300
AGAGVDGKDA ASVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.295851e-107meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G027563
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G027563_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620761e-104BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279381e-104KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652712.11e-164PREDICTED: transcription factor bHLH69-like isoform X1
SwissprotQ9ZUG99e-71BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A096Q7F30.0A0A096Q7F3_MAIZE; Uncharacterized protein
STRINGGRMZM2G027563_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-42LJRHL1-like 1