PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G027333_P01
Common NameLOC100278452, ZEAMMB73_071804, Zm.31196
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 468aa    MW: 50452.7 Da    PI: 8.0201
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G027333_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-0683105123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++Cgk F r  nL+ H r H
  GRMZM2G027333_P01  83 FVCEICGKGFQRDQNLQLHRRGH 105
                        89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-782105No hitNo description
SMARTSM003550.01283105IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-583105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.61483105IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM00355130126156IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.39E-7156181No hitNo description
SMARTSM00355160161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MFHHQQELLQ AEAAAADRES SMSNLTSSTS GGPNAAPAAA AAAPPAPAAS GNNKRKRSLP  60
GNPDPEAEVV ALSPATLMAT NRFVCEICGK GFQRDQNLQL HRRGHNLPWK LKQRGTGKEA  120
QRRKVYVCPE ASCVHHDPAR ALGDLTGIKK HFFRKHGEKK WKCDKCSKKY AVHSDWKAHS  180
KICGTREYKC DCGTIFSRRD SFITHRAFCD ALTEESAKAI GLNAMAAVPA QHHHHPMLFS  240
PPPTHVMQQD VALLQEHHHQ EVMQQEHCNY AMKTEMPPWP GMTYDHPLLQ PLCNAAAPQS  300
SATSTPPPPT TMQLPAAYAH LSATALLQKA AQMGATVAGA GYTQMAGAAT SATFGLGLPD  360
LQNTQQQQHQ DGEIMAGLAR TASHGRGGEE GGGGGGDGMT RDFLGLRAFS HRDILGLAGL  420
DSSCMGAIIS ASASMNCYDE PQQRAQAQAE QQQQSSNEQW HSMGSHQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33157223369Zinc finger protein JACKDAW
5b3h_F2e-33157223369Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.311960.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G027333
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G027333_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569260.0EU956926.1 Zea mays clone 1577561 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348266.10.0uncharacterized protein LOC100278452
SwissprotQ8H1F51e-114IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLK7VYZ50.0K7VYZ5_MAIZE; Protein indeterminate-domain 9
STRINGGRMZM2G027333_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.13e-93C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]