PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G027253_P01
Common NameABI37, LOC103631075
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 224aa    MW: 25205.8 Da    PI: 10.3277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G027253_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.21e-2528125194
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+kv tpsdv+k++rlv+pk+fae+h          +++ l + d  + g+ W+++++y+ +s++yv+tkGW+++v++++L +gD+v F + 
  GRMZM2G027253_P01  28 FEKVVTPSDVGKLNRLVVPKQFAERHlplrgAAARSRGMVLCFHDdaRGGEAWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVAFCR- 118
                        99***************************984445578889999876777***************************************94. PP

                        SSSEE..EE CS
                 B3  86 grsefelvv 94 
                          ++++l++
  GRMZM2G027253_P01 119 --DGARLFI 125
                        ..4455555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-3520135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-2824132IPR015300DNA-binding pseudobarrel domain
CDDcd100176.91E-2126121No hitNo description
SMARTSM010192.6E-1628133IPR003340B3 DNA binding domain
PROSITE profilePS5086313.43728131IPR003340B3 DNA binding domain
PfamPF023627.4E-2328127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MALTTLTLEL ESAAGDYSHS HSRRERMFEK VVTPSDVGKL NRLVVPKQFA ERHLPLRGAA  60
ARSRGMVLCF HDDARGGEAW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA GDTVAFCRDG  120
ARLFIDCQRR RRTTTRRSGS EGAVVLPAPA IGAAVPPMCQ LQMTVVFPAG QHQQAAVAMK  180
KETAAAQQED DNEVQRRRGR CLRLFGVNLL DELRTEPLLL DLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-382513911126DNA-binding protein RAV1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G027253
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G027253_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269650.0KJ726965.1 Zea mays clone pUT3665 ABI3VP1 transcription factor (ABI37) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650301.11e-166PREDICTED: B3 domain-containing protein Os06g0107800-like
SwissprotQ5VS555e-48Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLK7UJS61e-166K7UJS6_MAIZE; ABI3VP1 transcription factor (Fragment)
STRINGGRMZM2G027253_P011e-165(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1558924
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-41B3 family protein