PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G027068_P01
Common NamebHLH48, Zm.9989
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 263aa    MW: 27153.6 Da    PI: 7.0499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G027068_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.7e-1167113354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r+h e+E+rRR+ri+s +++Lr +l  +     +K +Ka+ L kAve +++L
  GRMZM2G027068_P01  67 RNHREAEKRRRERIKSHLDRLRNVLACD-----PKIDKASLLAKAVERVRDL 113
                        78************************98.....7*************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.82164113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-967113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1167118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1068117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-870119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MFPVEVSALA AGGAGAGRQA AGDAAGTMLP PFFMGSIWPA TAGAAGSEED EAAAAAAAHD  60
RALAASRNHR EAEKRRRERI KSHLDRLRNV LACDPKIDKA SLLAKAVERV RDLKQRAAGV  120
GEAAPAHLFP TEHDEIVVLA SGSGAVFEAS VCCDDRSDLL PDLIETLRAL RLRTLRSEMA  180
TLGGRVRNVL VLARDVVDGG GGAVAGGDDG YGGRAADSAG GATDGGGGDF LKEALRALVE  240
RPGAAGDRPK RRRVSDMNMQ AAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249253KRRRV
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G027068
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G027068_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279660.0KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466222.11e-113hypothetical protein SORBIDRAFT_01g003830
TrEMBLA0A060D1T90.0A0A060D1T9_MAIZE; BHLH transcription factor (Fragment)
STRINGGRMZM2G027068_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-32bHLH family protein