PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G026417_P01
Common NameLOC100275086
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 383aa    MW: 40715.6 Da    PI: 5.1361
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G026417_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.92.7e-3263162297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkif 89 
                        lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++k+qlveKirrLK+K++++v++ +  g  ++f+++h+q if
  GRMZM2G026417_P01  63 LFQRLWTDEDEIVILRAFAEFTAQRGTafASHQyDTTPFYEDMRRRLNTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFNFRSPHEQAIF 154
                        79*************************9977778***************************************88899************** PP

             DUF573  90 elskkiWg 97 
                        e+++ iW+
  GRMZM2G026417_P01 155 EIARTIWR 162
                        *******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.2E-3064161IPR007592Protein of unknown function DUF573
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MFPTVDDPSA AGAMVSASFP DADAYGNGDS DDLDFPVDPN PNPVFSSPAA PASAGAAGER  60
RPLFQRLWTD EDEIVILRAF AEFTAQRGTA FASHQYDTTP FYEDMRRRLN TGFTKNQLVE  120
KIRRLKRKYR NCVERLRVAG AGFNFRSPHE QAIFEIARTI WRPASDKHGR DSDDEGGGGG  180
NNAHDATFAM DAATFAIDAA LAAANGGSAK SPTSRPRRGR RRRTGDFPAD AVPETTLALP  240
PAPMPVMTED VLPSFPQVTA AAVMDGGCGV SVDPASGLPA ALSTAAAAAA VSGSSTAENP  300
ILAALFKEMV HAMLSVGVGG STALLGLEPP PPIAGVPMEG EKWRQQRIQE LEVYLRRIDL  360
LQDQARAALD ELRSAPHAGG MNT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.802110.0pericarp| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G026417
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G026417_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876800.0BT087680.1 Zea mays full-length cDNA clone ZM_BFb0156A22 mRNA, complete cds.
GenBankEU9542300.0EU954230.1 Zea mays clone 1459363 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142743.10.0uncharacterized protein LOC100275086
TrEMBLB6SNB50.0B6SNB5_MAIZE; Putative transcription factor
TrEMBLK0DFD90.0K0DFD9_MAIZE; GBP18 GeBP type transcription factor (Fragment)
STRINGGRMZM2G026417_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.21e-31DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]