PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G023872_P01
Common NameLOC103635363, ZEAMMB73_233411, Zm.13257
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 508aa    MW: 56088.1 Da    PI: 6.3404
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G023872_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS317.72.4e-97994751373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                        lv+lL++c  a+++gd + aq  L++ +++    p+ + + R+ ++f  AL +rl+       +a pps+++    s+++  ++ f+++ P+
  GRMZM2G023872_P01  99 LVHLLITCTSAIETGDYSIAQGNLSEARKIlgEIPTSTGIGRVGKHFIDALVQRLFP---AYPHAAPPSPSP----STSIDLHNNFYDAGPY 183
                        68***************************99899999*******************9...333444666655....667777889******* PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        lkf++ taNqaIl+a++g ++vHiiDf+++qGlQWpaL++ +++R++gpp+lRiTg+g++  g ++el+e+g rLak+A+++g++f f+ + 
  GRMZM2G023872_P01 184 LKFAYSTANQAILKAIKGYNHVHIIDFSLMQGLQWPALMDVFSAREGGPPKLRITGIGPNPIGGRDELHEVGIRLAKYAHSVGIDFTFQGVC 275
                        ***********************************************************8888***************************** PP

               GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                        +++l+ l  ++L +kp  gEa+a+n++lqlhrll ++ + +    ++d +Lklv +++P +++vve+eadhn++++lerf++al +y+++fd
  GRMZM2G023872_P01 276 VDQLDRLCDWML-LKPikGEAVAINSILQLHRLLVDPDANPVvpaPIDILLKLVIKINPMIFTVVEHEADHNRPPLLERFTNALFHYATMFD 366
                        *******88888.56566***************97776655455699********************************************* PP

               GRAS 270 sleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesg 356
                        slea    +s  +   ++ +++l+ ei ++v+ eg++r+erhe +++Wrerl+ aG+++v ++ +++++ k  l +v    + g+++   +g
  GRMZM2G023872_P01 367 SLEAMHRCTSgrDITDSLTEVYLRGEIFDIVCGEGSARTERHELFGHWRERLTYAGLTQVWFDPDEVDTLKDQLIHVTslsGSGFNILVCDG 458
                        ***99888885555667999*********************************************9999886554443333788******** PP

               GRAS 357 slvlgWkdrpLvsvSaW 373
                        sl l W++rpL++++aW
  GRMZM2G023872_P01 459 SLALAWHNRPLYVATAW 475
                        ***************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.13873453IPR005202Transcription factor GRAS
PfamPF035148.4E-9599475IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDAHTTHIVA RKNTSLSFTS NELMDHFPFA WLPMDPFTAM ALSGTLSPSF STTSTNDTMY  60
NLNPALYASL VPPIRKPATP TTLEVGRQCK EEEDASIRLV HLLITCTSAI ETGDYSIAQG  120
NLSEARKILG EIPTSTGIGR VGKHFIDALV QRLFPAYPHA APPSPSPSTS IDLHNNFYDA  180
GPYLKFAYST ANQAILKAIK GYNHVHIIDF SLMQGLQWPA LMDVFSAREG GPPKLRITGI  240
GPNPIGGRDE LHEVGIRLAK YAHSVGIDFT FQGVCVDQLD RLCDWMLLKP IKGEAVAINS  300
ILQLHRLLVD PDANPVVPAP IDILLKLVIK INPMIFTVVE HEADHNRPPL LERFTNALFH  360
YATMFDSLEA MHRCTSGRDI TDSLTEVYLR GEIFDIVCGE GSARTERHEL FGHWRERLTY  420
AGLTQVWFDP DEVDTLKDQL IHVTSLSGSG FNILVCDGSL ALAWHNRPLY VATAWCVTGG  480
NAASSMVGNI CKGTNDSRRK ENRNGPME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-43994754374GRAS family transcription factor containing p
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.132570.0embryo| endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G023872
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G023872_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0682550.0BT068255.1 Zea mays full-length cDNA clone ZM_BFb0111E22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306661.10.0DELLA protein GAI-like
TrEMBLC0PIY60.0C0PIY6_MAIZE; Scl1 protein
TrEMBLK0DG080.0K0DG08_MAIZE; GRAS20 transcription factor (Fragment)
STRINGGRMZM2G023872_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12511550
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.15e-84GRAS family protein
Publications ? help Back to Top
  1. Pysh LD,Wysocka-Diller JW,Camilleri C,Bouchez D,Benfey PN
    The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes.
    Plant J., 1999. 18(1): p. 111-9
    [PMID:10341448]
  2. Shen B, et al.
    Partial sequencing and mapping of clones from two maize cDNA libraries.
    Plant Mol. Biol., 1994. 26(4): p. 1085-101
    [PMID:7811968]