PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G023708_P01
Common NameEREB125, ZEAMMB73_799165
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 272aa    MW: 28369.6 Da    PI: 4.3477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G023708_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-184091156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  GRMZM2G023708_P01 40 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 91
                       5799******.**********843...4*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.49E-284099No hitNo description
SMARTSM003803.1E-3241104IPR001471AP2/ERF domain
PROSITE profilePS5103221.5624198IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-214198IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-294198IPR001471AP2/ERF domain
PfamPF008479.6E-114190IPR001471AP2/ERF domain
PRINTSPR003671.5E-84253IPR001471AP2/ERF domain
PRINTSPR003671.5E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MNFSSYFFSS SSSSSDKKSS SSSSKRRQQA AQPQPDANTT RYLGVRRRPW GRYAAEIRDP  60
ATKERHWLGT FDTAEEAAVA YDRAARSLRG ARARTNFAYP DLPPGSSVTP YLSPDLTSGD  120
NATQLLQPFY ADPAASLAAA AAPAATNGAA GYGAAGDYAS YGYSAEDMSA LMEDLAIPDD  180
LTADYGAEDA GGGSVNMPSM YSGGGGANAS SGSGWCDASE FSAYGAPTTA ASHGVYFEEG  240
YVHSPLFSPM PAVDDASADG FQLGGSSSSY YY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-183797162ATERF1
3gcc_A4e-183797162ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G023708
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G023708_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282750.0KJ728275.1 Zea mays clone pUT6553 AP2-EREBP transcription factor (EREB125) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663161.10.0ethylene-responsive transcription factor LEP
TrEMBLK7TP090.0K7TP09_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G023708_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-24ERF family protein