PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G021573_P01
Common NameLOC100384380, ZEAMMB73_355599
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 649aa    MW: 70083.5 Da    PI: 7.2245
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G021573_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.7e-11283340155
                AP2   1 sgykGV.rwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV ++++++gr++A+++d  +  +g  rk  + g ++t+++Aa+a++ a++k++g
  GRMZM2G021573_P01 283 SRYRGVtSRHRWTGRYEAHLWDnSCRkDGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 340
                        79*****9**************54445554335555.77***99*************98 PP

2AP246.59.4e-15383434155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++grW ++I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GRMZM2G021573_P01 383 SIYRGVTRHHQQGRWQSRIGRVAG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 434
                        57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-12283350IPR016177DNA-binding domain
PfamPF008473.4E-8283340IPR001471AP2/ERF domain
CDDcd000181.74E-15283349No hitNo description
Gene3DG3DSA:3.30.730.107.1E-12284349IPR001471AP2/ERF domain
SMARTSM003802.8E-18284354IPR001471AP2/ERF domain
PROSITE profilePS5103217.728284348IPR001471AP2/ERF domain
CDDcd000187.59E-23383444No hitNo description
PfamPF008471.2E-8383434IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-17383443IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-17384442IPR001471AP2/ERF domain
SMARTSM003803.0E-30384448IPR001471AP2/ERF domain
PROSITE profilePS5103218.597384442IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MANGSNWLGF SLSPHTAMEV PSVSEPASTH HAPPPPSSST TISSSSTNNT ISSNFLFSPM  60
ASPYPGYYCV GGAYGDGTSA AGVYYSHLPA MPNKSDDGTL CNMEGMVPSS PPKLEDFLGG  120
GNGGGQETAT YYSHQQQGQE EGASRDYRQY HYQHQQLVPY NFQPLTEAEM LQEGAAPMEE  180
AMAAAKNFLL ASYGACYSNE ETRPLSLSMM SPGTQLSSCV SAAPQQQHQM AATVATAATA  240
AAALGRSNGD GEQCVGRKRS TGKGGHKQTV HRKSIDTFGQ RTSRYRGVTS RHRWTGRYEA  300
HLWDNSCRKD GQTRKGRQGG YDTEDKAARA YDLAALKYWG PATHVNFPVE NYRDELEEMK  360
GMTRQEFVAH LRRRSSGFSR GASIYRGVTR HHQQGRWQSR IGRVAGNKDL YLGTFTTQEE  420
AAEAYDIAAI KFRGLNAVTN FDIARYDVDK IMESSTLLAV EEARKVKAVE AASSAPMTHT  480
HSGGKEQLNA TTAEETSSAG WRMVLHGSPH QLEAARCPEA ADLQSAIMNN DSHPRPSLHG  540
IAGLDIECAV HDHHDHLDVP AGSRTTAAGS INFSNSSSQV TSLGNSREGS PERLGLAMMY  600
GKQPSSAVSL AATMSPWTPV AAQTVAHVLK QQPNVVVSHR PVFAAWADA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G021573
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G021573_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699790.0BT069979.1 Zea mays full-length cDNA clone ZM_BFb0363I04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349283.10.0uncharacterized protein LOC100384380
SwissprotQ84Z021e-127CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A3L6DD800.0A0A3L6DD80_MAIZE; AP2-like ethylene-responsive transcription factor ANT
STRINGGRMZM2G021573_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-104AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]