PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G020805_P01
Common NameLOC100383331
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 440aa    MW: 46223.4 Da    PI: 9.9507
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G020805_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.61.3e-39621972128
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec.......e 74 
                         g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++                           +
  GRMZM2G020805_P01  62 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIRAAAEAIDKLPSLdaaagfpahpasA------KdhappvgD 147
                        689*************************************************************8888664432221......222222232 PP

                TCP  75 aesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertre 128
                        ++++     +++++++ + + +s+ s++s+ s+l+l++ esr kar+rarer++ 
  GRMZM2G020805_P01 148 DDDH-----HHQQQQQLTRSGCSSTSETSKGSVLSLSRsESRVKARERARERNTV 197
                        2222.....23333667777799999999999*******************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-4063197IPR005333Transcription factor, TCP
PROSITE profilePS5136931.97264122IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.992181201IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEVEAMGGAG GKRGRAKGAG AGAGAEPEPK RRAMAVAVQP PAAAPWAQQH PASRIYRVSR  60
ASGGKDRHSK VYTAKGIRDR RVRLSVATAI QFYDLQDRLG YDQPSKAIEW LIRAAAEAID  120
KLPSLDAAAG FPAHPASAKD HAPPVGDDDD HHHQQQQQLT RSGCSSTSET SKGSVLSLSR  180
SESRVKARER ARERNTVARD KDPAANDTTA TTSAQAASFT ELLTGMAAAS AAPAQHKHQL  240
RQSSVSWQPT IVSATTDYIG FAQPRKGGGH AMAHAFASPA PHLGNIASIA MAPAQHFGLA  300
SGAVTVASGG GGEPHAEMTH FSFLQDHFMP VHAAPAPAPA SAPAGEYNLD FSMSSGLMGV  360
NTRGALQSNS QPHISGHHHQ QQQLQRLSTP LDAPNIPFLY SSAAAAAAAV TTPTTADGQF  420
AAFQLWNGFQ HADMKEKGKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2769123155Putative transcription factor PCF6
5zkt_B7e-2769123155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1241140.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G020805
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G020805_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0669300.0BT066930.1 Zea mays full-length cDNA clone ZM_BFb0110J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001336965.10.0uncharacterized protein LOC100383331
TrEMBLA0A1D6F9D00.0A0A1D6F9D0_MAIZE; Transcription factor TCP2
STRINGGRMZM2G020805_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2