PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G019907_P02
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 329aa    MW: 36526.2 Da    PI: 8.4666
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G019907_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.51.9e-104687546
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46
                       k  rr+++NReAAr+sR+RKka+i++Le    +L++  ++L 
  GRMZM2G019907_P02 46 KTLRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQELH 87
                       7889************************97777777666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-83589No hitNo description
SMARTSM003381.5E-742105IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.1864488IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-84690No hitNo description
PfamPF001701.3E-74687IPR004827Basic-leucine zipper domain
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PfamPF141443.0E-31128203IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAGSPMTDTS TDPDTDERNQ MFEQGLVAVP TASDSSDKSR DKLDQKTLRR LAQNREAARK  60
SRLRKKAYIQ NLESSRLKLT QLEQELHQTR QQGIFISTSG DQPQSTSGNG ALAFDMEYAR  120
WLEEHNKHVN ELRLAVNAHA GDNDLRGIVG SVMAHYDEFF RLKGVAARSD VFHVLSGMWK  180
TPAERCFMWL GGFRSSEVLK LLAGHLEPLT DQQLVGISNL QQSSQQAEDA LSQGMEALQQ  240
SLAETLASGS LGPAGPSGNV ANYMGQMAMA MGKLGTLENF LRQADNLRLQ TLQQMQRILT  300
TRQSARALLA ISDYFSRLRA LSSLWLARP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1290.0pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G019907
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G019907_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0344560.0BT034456.1 Zea mays full-length cDNA clone ZM_BFc0173A06 mRNA, complete cds.
GenBankX691530.0X69153.1 Z.mays OBF3.1 mRNA for ocs-element binding factor 3.1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105735.10.0uncharacterized protein LOC542756
RefseqXP_020405653.10.0uncharacterized protein LOC542756 isoform X1
RefseqXP_020405656.10.0uncharacterized protein LOC542756 isoform X4
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLQ069780.0Q06978_MAIZE; Ocs-element binding factor 3.1
STRINGSb03g037560.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-147bZIP family protein