PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G018487_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 397aa    MW: 42797.9 Da    PI: 10.5926
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G018487_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31332390259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  GRMZM2G018487_P01 332 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 390
                        69*************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.0E-16285329IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.9E-34319391IPR003657WRKY domain
PROSITE profilePS5081129.757326392IPR003657WRKY domain
SuperFamilySSF1182908.89E-27329390IPR003657WRKY domain
SMARTSM007742.5E-38331391IPR003657WRKY domain
PfamPF031068.8E-27333389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEGMEEANRT AVESCHRVLA LLSNPHGQLV PSKELVAATG EAVAKFGSLT AKLSNSNGDG  60
LLQGHARVRK VKKPLHIFDS NLFLESSAVA AAAAPAKTPS PSPILGLQLF PRYHQFEGSS  120
SKDPVRIPTQ FPKRLLLEKP TAGMEGSTSQ SPPIVQMVQP VSVAPPAGTP TPALPPAHLH  180
FIQQQQSYQR FQLMQQMKIQ SEMMKRSNLG DQGGSLSGGG GGGRKGVNLK FDSSNCTASS  240
SRSFLSSLSM EGSLASLDGS RTSRPFQLLS GSQTASTPEL GLVQRRRCAG REDGTGRCAT  300
GSRCHCSKKR KLRIRRSIKV PAISNKVADI PADEFSWRKY GQKPIKGSPH PRGYYKCSSV  360
RGCPARKHVE RCVDDPSMLI VTYEGDHNHN RVLAQPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-193293901272WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.935240.0cell lignification| ear| embryo| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G018487
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G018487_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q32SG4
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9561730.0EU956173.1 Zea mays clone 1558475 WRKY transcription factor 21 mRNA, complete cds.
GenBankBT0839930.0BT083993.1 Zea mays full-length cDNA clone ZM_BFb0063A21 mRNA, complete cds.
GenBankAY9406800.0AY940680.1 Zea mays WRKY1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105837.10.0protein WRKY1
RefseqXP_008649271.10.0PREDICTED: protein WRKY1 isoform X1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLB6STV80.0B6STV8_MAIZE; Uncharacterized protein
STRINGGRMZM2G018487_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-50WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Phelps-Durr TL,Thomas J,Vahab P,Timmermans MC
    Maize rough sheath2 and its Arabidopsis orthologue ASYMMETRIC LEAVES1 interact with HIRA, a predicted histone chaperone, to maintain knox gene silencing and determinacy during organogenesis.
    Plant Cell, 2005. 17(11): p. 2886-98
    [PMID:16243907]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]