PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G017586_P01
Common NamebHLH172, TIDP2894, ZEAMMB73_842128
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 253aa    MW: 27556.3 Da    PI: 5.0455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G017586_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95.1e-1087134454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++  rEr RR+++N++f eL + l +    +  K +Ka+iL  A++ + +L
  GRMZM2G017586_P01  87 SKACRERMRRNKLNDRFLELGSALEPG---KPVKADKAAILSDATRMVIQL 134
                        6789**********************9...99*************988777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-1381153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.99883134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.37E-886139No hitNo description
PfamPF000102.2E-787134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1287157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-989140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSLPPGPADS GTGTGDDWFL DCGILDDLPA AACGAFPWDA SPSSSNPSVE VGSYVNANDA  60
FKEPNDVFKE PGSSKRLRSG SSDMPTSKAC RERMRRNKLN DRFLELGSAL EPGKPVKADK  120
AAILSDATRM VIQLRSESQQ LKETNGSLEE KIKELKAEKD ELRDEKQKLK LEKESLEHQM  180
KLMASAPAYM PHPTLMPAPF AQAPLAPFHA QGQAAGQKLM MPFVGYPGYP MWQFMPPSEV  240
DTSKDSEACP PVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1181360.0cell lignification| endosperm| meristem| ovary| pollen| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G017586
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G017586_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0397420.0BT039742.1 Zea mays full-length cDNA clone ZM_BFc0042O08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677332.10.0PREDICTED: LOC100284429 isoform X1
SwissprotQ9FH372e-70ILR3_ARATH; Transcription factor ILR3
TrEMBLB4FRK40.0B4FRK4_MAIZE; BHLH transcription factor
STRINGGRMZM2G017586_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7551766
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.19e-46bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]