PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G017349_P01
Common NamebHLH125, LOC100193167, ZEAMMB73_319117
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 312aa    MW: 33560.6 Da    PI: 6.5209
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G017349_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.4e-16109155455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  E+rRR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  GRMZM2G017349_P01 109 VHNLSEKRRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 155
                        6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-21102166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-20103165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.076105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.22E-18108159No hitNo description
PfamPF000108.9E-14109155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-18111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MNEQGLGGLG GGRGAVQGHG REAMALLQHQ QLQQQRRQLE EEDEVRRQMF GGVAAFPAAL  60
GHGQQVDYGE DAGGLGDSDA GGSEPEPPPE RTRGGSGGGG GKRSRAAEVH NLSEKRRRSK  120
INEKMKALQS LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LSMRNGVYLN PPYLSGTIEP  180
AQASQMFAAV GGGNITASSS GAVMPPVNQS SGLQVFDPLN PPRDQPLSFV LPNVDKTIQE  240
APFHLESSQF HPRPFRMPES SEMMLPGEVV AKHQLTSIQG RVSMPGIGMN PIRQESSTVK  300
ADQFDGCSHS KE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192101RGGSGGGGGK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.965410.0meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G017349
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G017349_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353600.0BT035360.1 Zea mays full-length cDNA clone ZM_BFb0057H06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131794.10.0putative HLH DNA-binding domain superfamily protein
RefseqXP_008658091.10.0PREDICTED: putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBLB4FE220.0B4FE22_MAIZE; BHLH transcription factor
STRINGGRMZM2G017349_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-35bHLH family protein