PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G015037_P02
Common NameLOC103634970, ZEAMMB73_102265, Zm.87410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 425aa    MW: 44091.8 Da    PI: 7.1681
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G015037_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.97.5e-3488199289
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.eaesssssas.nss 86 
                        +g+kd+hsk++T++g RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai+ l  t      ++++s+   ++s ++s++ ++ 
  GRMZM2G015037_P02  88 TGRKDSHSKVCTARGTRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDRLETTlpaanAAPPSSSWtHPDSAENSDDqAQA 179
                        79**************************************************************9988544444333533333333330222 PP

                TCP  87 sg.................k 89 
                        ++                 +
  GRMZM2G015037_P02 180 ITvahtafdfpgadgflvpA 199
                        22555555555555555551 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-2988173IPR005333Transcription factor, TCP
PROSITE profilePS5136929.93690148IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGDASQSHSH SHSQHHGFQP QLLSFGGAGQ HHAHQFTAQA ASHLRPRGRG AVGAGGEAVA  60
TTSASRSRVR GGGGEAVAVQ GGHIARSTGR KDSHSKVCTA RGTRDRRVRL AAHTAIQFYD  120
VQDRLGYDRP SKAVDWLIKN AKDAIDRLET TLPAANAAPP SSSWTHPDSA ENSDDQAQAI  180
TVAHTAFDFP GADGFLVPAS LDSDTIKSFF PVAGTGGGEA EASSSATAAQ SSAMGYQSYT  240
PDLLSRTGGH SQELRLSLQS LPDPMFHHRS HGHGHGGDGS AQQALFPGAA SYSFGGGAAW  300
AEHAQSQRVA PWNAPDPGGG STGGYLLNVS QSQQAALGGQ SQFFFQRGPL QSSNQPSDSE  360
RGWPETVEAD NPMQHGGPTI GFAPGTSFSG IRIPTRIQGG EEHNGGSGNG DKPPPPPSVS  420
SASRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2095148154Putative transcription factor PCF6
5zkt_B2e-2095148154Putative transcription factor PCF6
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G015037
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G015037_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9714380.0EU971438.1 Zea mays clone 364731 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353090.10.0transcription factor PCF5
RefseqXP_008655766.10.0transcription factor PCF5
RefseqXP_008655767.10.0transcription factor PCF5
SwissprotQ8LT071e-142PCF5_ORYSJ; Transcription factor PCF5
TrEMBLA0A3L6DMJ20.0A0A3L6DMJ2_MAIZE; Transcription factor PCF5
TrEMBLK7VR250.0K7VR25_MAIZE; Transcription factor TCP4
STRINGGRMZM2G015037_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-42TCP family protein