PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G010871_P03
Common NameHSF24, LOC100280736
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 357aa    MW: 40502.5 Da    PI: 4.7259
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G010871_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.73.7e-33461372102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+++++ed++++ ++sws+ gnsf+v+d++ fa+ +Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++l
  GRMZM2G010871_P03  46 FLTKTFDLVEDPATDAVLSWSRAGNSFIVWDPHVFADGLLPRLFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHL 128
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l+ ikr+k 
  GRMZM2G010871_P03 129 LKMIKRRKP 137
                        ******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.9E-3742135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.6E-5842135IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.98E-3442135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-3046135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-184669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-188496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-1897109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDKPVAPGII KEELLEQQPP TQDGVGGGGD APRPMEGLHE VGPPPFLTKT FDLVEDPATD  60
AVLSWSRAGN SFIVWDPHVF ADGLLPRLFK HSNFSSFVRQ LNTYGFRKVD PDRWEFANEG  120
FLRGQRHLLK MIKRRKPPSA VAPLRQQRAP ASCLEVGEFG FEEEIDRLKR DKNILITEVV  180
KLRQEQQSTK DHVRAMEERL RVAEQKQVQM MGFLARAMRN PEFFQQLAQQ QDKRKELEDT  240
ISKKRRRPID NTPFYSDGES EQLDSQLKMF ESGVLNGLNE PELENLAVNI QELGKGSIDD  300
GNLTQVSDQS ELNDDFWAEL LVEDFGDKAG QPELEGRTED VNDLAQQLGY LSSSSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-252713510129Heat shock factor protein 1
5d5v_B2e-252713510129Heat shock factor protein 1
5d5v_D2e-252713510129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134LKMIKRR
2232246KRKELEDTISKKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.282350.0endosperm| meristem| pericarp| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G010871
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G010871_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278590.0KJ727859.1 Zea mays clone pUT5950 HSF transcription factor (HSF24) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673683.10.0PREDICTED: heat shock factor protein HSF30 isoform X1
RefseqXP_008673680.10.0PREDICTED: heat shock factor protein HSF30 isoform X1
RefseqXP_008673672.10.0PREDICTED: heat shock factor protein HSF30 isoform X1
RefseqXP_008673666.10.0PREDICTED: heat shock factor protein HSF30 isoform X1
RefseqXP_008673662.10.0PREDICTED: heat shock factor protein HSF30 isoform X1
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A060D2060.0A0A060D206_MAIZE; HSF transcription factor (Fragment)
STRINGGRMZM2G010871_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-109heat shock transcription factor A6B
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]