PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G009478_P05
Common NameLOC100273866
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 329aa    MW: 35268.4 Da    PI: 6.1826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G009478_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.35.9e-1856105255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  GRMZM2G009478_P05  56 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 105
                        889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.6E-2352122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-1952123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.84454104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.35E-1756109No hitNo description
PfamPF000102.2E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-1360110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDSGSRSSGG AGFDDEDGLT TRREVSSSLQ DLAVRVDWKG GSCSDGGTNQ GPNTPRSKHS  60
ATEQRRRSKI NDRFQILREL LPHNDQKRDK ATFLLEVIEY IRFLQEKAQK YEATFPEWNQ  120
ENPTMLPWSK GQIPGDSPPD PSHFVRNGSS PGSNFTGKLD DNHTSAAASG ALDQAETNHV  180
ASGCYRSSET PANITNNAIS QSQPQWTGPS PVDDSAVKSE MLNSQELAID EGMISVSSTY  240
SQELLISLSH ALQSSGVDLS QTSISVQINL GKRAGKRSAS AGGVSSNSKE PPADPASSNE  300
LGGHHVTTLG ASADGLLPHA TKRHKRDNS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.401960.0ear| endosperm| meristem| ovary| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G009478
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G009478_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9463680.0EU946368.1 Zea mays clone 305761 mRNA sequence.
GenBankBT0419490.0BT041949.1 Zea mays full-length cDNA clone ZM_BFb0086F14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141735.10.0putative HLH DNA-binding domain superfamily protein
TrEMBLB4FXW10.0B4FXW1_MAIZE; Uncharacterized protein
STRINGGRMZM2G009478_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-55BES1-interacting Myc-like protein 2