PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G009478_P03
Common NameLOC100273866
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 343aa    MW: 37000.4 Da    PI: 6.516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G009478_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.26.3e-1857106255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  GRMZM2G009478_P03  57 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 106
                        889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.7E-2353123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-1955130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.84455105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.05E-1757110No hitNo description
PfamPF000102.3E-1557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-1361111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDSGSRSSGG AGFDDEDGLT TRREVSSSLQ ADLAVRVDWK GGSCSDGGTN QGPNTPRSKH  60
SATEQRRRSK INDRFQILRE LLPHNDQKRD KATFLLEVIE YIRFLQEKAQ KYEATFPEWN  120
QENPTMLPWS NMYFRSFWKN AQSKGQIPGD SPPDPSHFVR NGSSPGSNFT GKLDDNHTSA  180
AASGALDQAE TNHVASGCYR SSETPANITN NAISQSQPQW TGPSPVDDSA VKSEMLNSQE  240
LAIDEGMISV SSTYSQELLI SLSHALQSSG VDLSQTSISV QINLGKRAGK RSASAGGVSS  300
NSKEPPADPA SSNELGGHHV TTLGASADGL LPHATKRHKR DNS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.401960.0ear| endosperm| meristem| ovary| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G009478
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G009478_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9497480.0EU949748.1 Zea mays clone 443309 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008667549.10.0PREDICTED: putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBLA0A096PVR70.0A0A096PVR7_MAIZE; Uncharacterized protein
STRINGGRMZM2G009478_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-57BES1-interacting Myc-like protein 2