PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G007063_P04
Common NameZm.16373
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 367aa    MW: 38746 Da    PI: 5.2707
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G007063_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.92.2e-13176227556
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                        + +rrkq+NRe+ArrsR RK a + eLe  v++L  eN++L  +l   +++ 
  GRMZM2G007063_P04 176 RQQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQKF 227
                        679**************************************98887777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.4E-15172236IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.461174229IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.5E-10175228No hitNo description
SuperFamilySSF579599.14E-10176226No hitNo description
PfamPF001703.3E-10176225IPR004827Basic-leucine zipper domain
PfamPF124982.7E-49243360IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MNRCPSEWYF QKFLEEAVLD SPGPVAGVGR SSGQAGVEAA ESKPLGAAAP ASVSSSVVDP  60
VEYNAMLKQK LEKDLAAIAM WRASGAAPPD LSATAASLPS VGAPHAAPLK PVGGTESLVQ  120
NMLAGAPVGG SGPHVVQIAD IPVKQTTSSS SREQSDDDDM EGDAETNGNG NPVQQRQQRR  180
KQSNRESARR SRSRKAAHLN ELEAQVAQLR VENSSLLRRL ADVNQKFNEA AVDNRVLKAD  240
VETLRAKVKM AEDSVKRVTG MNALYPAVSD MSSLSMPFNG SPSDSASDST VPVQDDLNSY  300
FANPSEIGCN NGYMPDIASS VQQDDNFVNG YQAAGKMGRT DSLQRVASLE HLQKRMCGGP  360
ASSGSTS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.163730.0meristem| ovary| pericarp| pollen| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G007063
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 5 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G007063_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0405960.0BT040596.1 Zea mays full-length cDNA clone ZM_BFc0102P10 mRNA, complete cds.
GenBankBT0677730.0BT067773.1 Zea mays full-length cDNA clone ZM_BFc0156G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105315.10.0opaque2 heterodimerizing protein 2
SwissprotQ7X9A81e-164RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLB4FU080.0B4FU08_MAIZE; Uncharacterized protein
STRINGGRMZM2G007063_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.25e-41bZIP family protein
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]