PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006578_P01
Common NameLOC100272950
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 406aa    MW: 45502.8 Da    PI: 7.6048
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006578_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.7e-11103146141
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                        e++ k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  GRMZM2G006578_P01 103 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 146
                        6778999************************9633355555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-899151No hitNo description
SMARTSM003382.6E-7103194IPR004827Basic-leucine zipper domain
PfamPF001702.5E-8104146IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082105147IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.65E-7108149No hitNo description
PROSITE patternPS000360110125IPR004827Basic-leucine zipper domain
PfamPF141442.2E-28203277IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDAETLNIFP SQPMHVEPSP KGEISLVLSP APVGSKQPRS PDHHHHQQAA MEELAGSRRQ  60
QEHLHLQHHQ PFAAAAEPAA PGMIKDVKPL AKKDHRRGTS TAERDPKTLR RLAQNREAAR  120
KSRLRKKAYI QQLESSRIRL AQLEQELHTA RAQGVFFPNS GILADQGVAG KGVPIGGIDG  180
LSSEAAMFDV EYGRWQEEHY RLMYELRAAL QQHLPEGELQ MYVESCLAHH DEMVGIKEGA  240
IKGDVFHLIS GVWRSPAERC FLWLGGFRPS EVIKMLLSHV EPLTEQQIVG VYGLQQSALE  300
TEEALSQGLE ALYQSLSDTV VSDALSCPSN VSNYMGQMAV AMNKLSTLEG FVRQAENLRQ  360
QTLHRLHQVL TTRQMARSLL AVSDYFHRLR TLSSLWVTRP RAPQEQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.275920.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006578
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006578_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0434360.0BT043436.2 Zea mays full-length cDNA clone ZM_BFc0188L07 mRNA, complete cds.
GenBankBT0638980.0BT063898.1 Zea mays full-length cDNA clone ZM_BFc0118B03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651077.10.0putative bZIP transcription factor superfamily protein isoform X1
SwissprotQ52MZ21e-161TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLB4G2480.0B4G248_MAIZE; BZIP transcription factor family protein
STRINGGRMZM2G006578_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-146bZIP family protein