PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G005815_P01
Common NameLOC100277492
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 462aa    MW: 50970.7 Da    PI: 8.7669
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G005815_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.71.5e-321402342103
                        HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
       HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                        F+ k+ye+++d++++ ++sw     gn+fvv+d++ +a+ +Lp++Fkh nfaSFvRQLn+YgF+kv+ ++         weF+++sF +g+k
  GRMZM2G005815_P01 140 FVAKTYEMVSDAATDAVVSWApcGAGNTFVVWDPQALATGILPRFFKHANFASFVRQLNVYGFRKVNPDR---------WEFANESFLAGQK 222
                        9********************55556*****************************************999.........************* PP

                        XXXXXXXXXXXX CS
       HSF_DNA-bind  92 ellekikrkkse 103
                        +ll++i+r++ +
  GRMZM2G005815_P01 223 HLLKSIRRRRAS 234
                        ********9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.2E-49136231IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-29137231IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.9E-33138231IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.3E-28140231IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-17140163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-17180192IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340181205IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-17193205IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MLHRRCLQGT TYKKKLQTVL FFFPKNFYNF RSIMALVVCS CLYKMPKPRT PSPRPPHRIA  60
TGPPRSQMAS SSSCPLAPGT SGCKPRTTRT SGVGFGVEAM ARSVAAVKLE PKPEPWAAEA  120
EEGSSVVPRS MEGPPFPAPF VAKTYEMVSD AATDAVVSWA PCGAGNTFVV WDPQALATGI  180
LPRFFKHANF ASFVRQLNVY GFRKVNPDRW EFANESFLAG QKHLLKSIRR RRASKPQVEA  240
SPRNSASACS GQPNKDPGVV ESLKRDRAAL RAEVITLRQQ YSICKSQLVA LEERILNNER  300
DQQKAIAFFA KVLSNPAFVQ QVLRNYARER ELHGASKRQR LMENEGHRQG DLPLRGSTEA  360
AFATGAAGVS VGTGSTNVGT AARQEESGSE LNDQEVNSIW SDVWDELDLD LDAVPGAEMD  420
RREADKGVAG FHDVEDLSGR PCGWGDEFSY LAEPMQFVEH YD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-2313123411123Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.301980.0tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G005815
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G005815_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0695720.0BT069572.1 Zea mays full-length cDNA clone ZM_BFb0177O03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455822.10.0hypothetical protein SORBIDRAFT_03g025770
SwissprotQ657C01e-135HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLA0A096PTC30.0A0A096PTC3_MAIZE; Uncharacterized protein
STRINGGRMZM2G005815_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Representative plantOGRP1432844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-68heat shock transcription factor A2