PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G004356_P01
Common Namepco139297, Zm.28767
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 285aa    MW: 30265.2 Da    PI: 7.0781
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G004356_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08135179554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  GRMZM2G004356_P01 135 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 179
                        99***********************7.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-15128189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-10128184No hitNo description
PROSITE profilePS5088815.77130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-14132190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-6135179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAGQPPPQGP EDDFFDQFFS MTAGGSYPGA TAGGGRAPGD QPFSLALSLD AAAAEASGSG  60
KHADGGKADR EAIQLPGLFP PAFGGGVQPP HLRATPPTQV FHAQQPKQGG AAVGPQPPAP  120
RPKVRARRGQ ATDPHSIAER LRRERIAERM RALQELVPNT NKTDRAAMLD EILDYVKFLR  180
LQVKVLSMSR LGGAGAVAQL VADIPLSVKG EASDSGSKQQ IWEKWSTDGT ERQVAKLMEE  240
DIGAAMQFLQ SKALCMMPIS LAMAIYDTQH SQDGQPVKPE PNTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.287670.0ear| meristem| ovary| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G004356
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G004356_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9734110.0EU973411.1 Zea mays clone 398294 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152044.10.0uncharacterized protein LOC100285681
SwissprotO227683e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLB6U8460.0B6U846_MAIZE; BHLH transcription factor
STRINGGRMZM2G004356_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-55bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]