PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC234164.1_FGP004
Common NameZEAMMB73_433354
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 630aa    MW: 66847 Da    PI: 6.9353
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC234164.1_FGP004genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS388.57.8e-1192376072374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPi 90 
                        v +L++cA+ v++ ++ +a+ +Larl e+asp+g +pm+R+aayf+eAL  r++r+++++++  pp+e ++     ++ ++al++++ v+Pi
  AC234164.1_FGP004 237 VVALTACADSVAACNHDAANYYLARLGEMASPAGpTPMHRVAAYFAEALTLRVVRMWPQVFDVSPPRELTDGAvaADDDATALRVLNAVTPI 328
                        5689*****************************************************************98887788999999********* PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        ++f h+t N+ +l+a++g++rvH+iDfdi+qGlQWp Llq+La+R ++p+++RiTgvg+    s++el+etg rL ++A++lg+ fef++ v
  AC234164.1_FGP004 329 PRFLHFTLNERVLRAFDGHDRVHVIDFDIKQGLQWPGLLQSLATRVAPPAHVRITGVGE----SRQELQETGARLGRVAAALGLAFEFHA-V 415
                        ***********************************************************....9**************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.ea 273
                        ++rled++l++L+vk+gE++aVn+vl+ hrll++++  +    ++L l +s+ + ++ + e+e  +ns+++ +rf++al+yy+a fd++ +a
  AC234164.1_FGP004 416 VDRLEDVRLWMLHVKRGECVAVNCVLAAHRLLRDETGAAV--ADFLGLTRSTGAAILLLGEHEDALNSGRWEARFARALRYYAAAFDAVeAA 505
                        ********************************77776666..89*********************************************889 PP

               GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgW 362
                        +l+ +s +r+k E++ ++rei+n+va e a+r+erhet+  Wr+r++e GF+++ +++++a q +++ r+++ +  y+v+   + + l+l W
  AC234164.1_FGP004 506 GLADASPARAKAEEM-FAREIRNAVAFEAADRFERHETFTGWRQRMQEGGFQNAGIGDREALQGRMIARMFApG-NYSVQvqGDGEGLTLRW 595
                        9**************.********************************************************54.48877435677888*** PP

               GRAS 363 kdrpLvsvSaWr 374
                        +d+++++vSaW+
  AC234164.1_FGP004 596 MDQAMYTVSAWT 607
                        ***********6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.113210585IPR005202Transcription factor GRAS
PfamPF035142.7E-116237607IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MEVVLGSAAR RCLASTAVAA ARALLQRMST AQRFDILPYG FSKRASNRGD GSGAAPRVAA  60
PDARSGGGGG TCSFRAHPAP PVTQAVSWGA KPEPGGNGAA WERSRAVKRA HEEDAGEEYG  120
GPVVRAKRTR MGGDGDKVWF HRSIAGTVQA AGSGDGHEAE EEKAFLVPSA AAFPHGMSAA  180
AAGPSLAVAK KEEFSKSPSN SPASSGGTDG GSSAVPWPEQ LHAQNGAAAR VEAMELVVAL  240
TACADSVAAC NHDAANYYLA RLGEMASPAG PTPMHRVAAY FAEALTLRVV RMWPQVFDVS  300
PPRELTDGAV AADDDATALR VLNAVTPIPR FLHFTLNERV LRAFDGHDRV HVIDFDIKQG  360
LQWPGLLQSL ATRVAPPAHV RITGVGESRQ ELQETGARLG RVAAALGLAF EFHAVVDRLE  420
DVRLWMLHVK RGECVAVNCV LAAHRLLRDE TGAAVADFLG LTRSTGAAIL LLGEHEDALN  480
SGRWEARFAR ALRYYAAAFD AVEAAGLADA SPARAKAEEM FAREIRNAVA FEAADRFERH  540
ETFTGWRQRM QEGGFQNAGI GDREALQGRM IARMFAPGNY SVQVQGDGEG LTLRWMDQAM  600
YTVSAWTPVS DGGSTVSASV STTASHSQHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6224361026382Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.342990.0cell lignification| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC234164.1_FG004
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM) and elongating cells of young seedlings. Expressed in leaf joints, culms, internodes, stems, young panicles, primary roots and lateral roots. {ECO:0000269|PubMed:19220793}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC234164.1_FGP004
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698760.0BT069876.2 Zea mays full-length cDNA clone ZM_BFb0307D24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001308989.10.0ATP synthase D chain, mitochondrial
SwissprotQ9LWU90.0DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLA0A1D6NWE20.0A0A1D6NWE2_MAIZE; Scarecrow-like protein 28
STRINGAC234164.1_FGP0040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Representative plantOGRP55071521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-117GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]