PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC233960.1_FGP005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 491aa    MW: 55013.6 Da    PI: 5.7556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC233960.1_FGP005genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.51e-07273337354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC................TTS-..STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkas.............kapskK..lsKaeiLekAveYIksL 54 
                        +a+ + Er RR++ N ++  Lr+l P+++                 +   ++ a+i+  A+eYI++L
  AC233960.1_FGP005 273 KANFATERERREQFNVKYGALRSLFPNPTkknslstvtkisrT--FTIfqNDRASIVGDAIEYINEL 337
                        68899**********************999****999999643..33335999***********988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-8266350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.287270337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-5273337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0028276343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-7277342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-5279342No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MIAGGGYFDG SHDHILMEGS MIHDSSQSSI YDNTDVEQQN FRFAPFIIED HSNPANLTSE  60
AARVIDQIQH QLGIDIEQDH SDHMMQEVPP AETENLVPAV YGVQDHILSH QIEGPHNITV  120
EQQVLGYDPA SYRNGTYAAA HDLLNSLHIQ RCSLIPEFPS TEHIFSDPAQ NMVNRLDITN  180
DLPGVANHES GMMFSDSTVP LGYHATQSHM LKDLYHSLPQ NYGLFTSDDE RDGMVGVPGV  240
SGNIFQEIDG RQFDSPILGS RKQKGGFGKG KGKANFATER ERREQFNVKY GALRSLFPNP  300
TKKNSLSTVT KISRTFTIFQ NDRASIVGDA IEYINELNRT VKELKILLEK KRNSADRRKI  360
LKLDEEAADD GESSSMQPVS DDQNNQMNGT IRSSWVQRRS KECDVDVRIV DDEINIKFTE  420
KKRANSLLCA AKVLEEFHLE LIHVVGGIIG DHHIFMFNTK IPKGSSVYAC AVAKKLLEAV  480
EIKKQAYNIF N
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC233960.1_FG005
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC233960.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9627970.0EU962797.1 Zea mays clone 245608 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149299.20.0helix-loop-helix DNA-binding domain containing protein
RefseqXP_008643696.10.0PREDICTED: helix-loop-helix DNA-binding domain containing protein isoform X1
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLA0A096PNX40.0A0A096PNX4_MAIZE; Uncharacterized protein
STRINGAC233960.1_FGP0050.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26591431
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.21e-50bHLH family protein