PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC233899.1_FGP002
Common NameLOC100273916, ZEAMMB73_328682
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 357aa    MW: 37735.9 Da    PI: 5.6166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC233899.1_FGP002genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-14133184155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++ + + a+i+  A++Y+++L+
  AC233899.1_FGP002 133 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 184
                        79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.6E-14131188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.96E-15131188No hitNo description
PROSITE profilePS5088816.075132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-17132198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-11133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MALEAVVFSQ PQAAAGHFGY GRGDSTTYAV PWCDLLQGGV GGGGGGFGDL CAAGEWDLDI  60
DTWAAAAAAA PTVELGGDDW DWEALSRDYQ SSDASTEYYH GGSRKAAAAP EPAGRRKRRR  120
AKAVKNKEEI ESQRMTHIAV ERNRRRQMNE YLAVLRSLMP PSYAHRGDQA SIVGGAINYV  180
RELEQLLQSL EVQKSIRSRP GAGAGAADSS PFAGFFSFPQ YSATTTSAHG GCSGNNNNNT  240
GSGGNRSDAA AAGAGAAGSS AVADVEVTMV EGHASLKVLA RRRPKQLLKL VAGLHQLRIP  300
PLHLNVTTVD AMVLYTFSLK VEDDSNMGSV EDIAAAVHEI IGSIEQQQQE EGETAVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115119RKRRR
2133144RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1191490.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC233899.1_FG002
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC233899.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420300.0BT042030.1 Zea mays full-length cDNA clone ZM_BFb0114I01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141780.10.0uncharacterized protein LOC100273916
SwissprotQ9C7T43e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLK7WGI10.0K7WGI1_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGAC233899.1_FGP0020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-30bHLH family protein