PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC214168.3_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 346aa    MW: 39283.1 Da    PI: 9.9387
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC214168.3_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP42.51e-131091393971
            E2F_TDP  39 vknkrRRiYDilNVLealnliekkekneirwkg 71 
                        v  ++RR YDi+NVLe+++li+kk kn+i wkg
  AC214168.3_FGP001 109 V--RKRRMYDITNVLEGIGLIKKKLKNRICWKG 139
                        5..89**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013727.0E-644139IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.18E-1098140IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-13107140IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.8E-12108139IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.78E-31149227No hitNo description
SuperFamilySSF1440741.05E-22151227No hitNo description
PfamPF164217.7E-21155235IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAHMIKNQFI PYLSFCWNKQ YRKSRLESFA ESGRKAPYGE YDTAESTGWS IVSSGFIHGV  60
DSPRKTPISG KTARKYKPKS ERTKAAPQAA TLNAGKFTWQ PTYSCWLSVR KRRMYDITNV  120
LEGIGLIKKK LKNRICWKGL GELGTNLDND LSVLKIDFEN LNLQEQALDE HISKIREKLK  180
DLTEDEGNQR WLFLTEDDIK GLPCFQNKTL IAIKAPHGSS LEVPNPDVLV AGKSKLSDIH  240
PYYIVSKTEE EMEGKLDDAA APAGHTNVAK HGSIKCPRTK RAWQRSRKEE VVPKAQKIQK  300
TPDLNAPCHS EGVLRKINPS DVEYLYKVKL RHSIIITHQL TENIKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109131RKRRMYDITNVLEGIGLIKKKLK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC214168.3_FG001
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC214168.3_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9490550.0EU949055.1 Zea mays clone 394824 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447808.11e-121hypothetical protein SORBIDRAFT_06g016190
TrEMBLA0A096PMF20.0A0A096PMF2_MAIZE; Uncharacterized protein
STRINGAC214168.3_FGP0010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12251749
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.16e-47E2F transcription factor 3