PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC200124.3_FGP005
Common NameGRAS66
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 111aa    MW: 12308.9 Da    PI: 4.6744
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC200124.3_FGP005genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS72.21e-222110205315
               GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreiv 295
                        n+vl+ h+ll +++  +    ++L l +s+ ++++ + e+e  +ns ++ +rf+ al+yy++ fd +  a+l+ +  +r+k E++ ++rei+
  AC200124.3_FGP005   2 NCVLAAHHLLYDETGAAV--VDFLGLARSTGATILLLGEHEDTLNSRRWEARFALALRYYATAFDVMgTAGLADAGPARAKAEEM-FAREIC 90 
                        9*******9977766666..79*********************************************888999999*********.****** PP

               GRAS 296 nvvacegaerrerhetlekW 315
                        n va e a+r+er et++ W
  AC200124.3_FGP005  91 NTVAFEAADRFERYETFAGW 110
                        *******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.2951111IPR005202Transcription factor GRAS
PfamPF035143.5E-202110IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MNCVLAAHHL LYDETGAAVV DFLGLARSTG ATILLLGEHE DTLNSRRWEA RFALALRYYA  60
TAFDVMGTAG LADAGPARAK AEEMFAREIC NTVAFEAADR FERYETFAGW W
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.342991e-101cell lignification| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC200124.3_FG005
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC200124.3_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282820.0KJ728282.1 Zea mays clone pUT6561 GRAS transcription factor (GRAS66) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676018.11e-48PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 28
TrEMBLK7UFS52e-75K7UFS5_MAIZE; GRAS transcription factor (Fragment)
STRINGAC200124.3_FGP0055e-75(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.12e-24GRAS family protein