PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC190734.2_FGP003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 359aa    MW: 38894.3 Da    PI: 7.178
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC190734.2_FGP003genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP155.43.3e-48992561136
                TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                        aa++kd hski+T++ +RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WL++ +k+ai+e++ +  +++sec e++sss s++ + ++   
  AC190734.2_FGP003  99 AAPRKDWHSKICTAGAMRDRRMRLSLDVARKFFELQDMLGFDKASKTVQWLINTSKAAIQEIMAD--DASSECvEDGSSSLSVDGKYNPael 188
                        689**************************************************************..6666799999999999955555666 PP

                TCP  89 ......................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                                              kaa+++++++ks ++a+    ++ke+rakar+rarert+ek+r+++++
  AC190734.2_FGP003 189 gggneksngnacsewkkpamvrKAATTTKPPRKSGNNAH--PVPDKETRAKARERARERTKEKHRMRWVK 256
                        77777777899******9987333333334444444444..88888*********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.033102160IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-41102252IPR005333Transcription factor, TCP
PROSITE profilePS5137011.593232249IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDSPLYQQLQ LSPPSPKPDQ SSSFYCYPCS PPFAAADASF HLSYHIGSSA TDTHPQTVVN  60
SPEIPVFPLM EQTPAPATEQ GAGACGAQGA GVSLDRAYAA PRKDWHSKIC TAGAMRDRRM  120
RLSLDVARKF FELQDMLGFD KASKTVQWLI NTSKAAIQEI MADDASSECV EDGSSSLSVD  180
GKYNPAELGG GNEKSNGNAC SEWKKPAMVR KAATTTKPPR KSGNNAHPVP DKETRAKARE  240
RARERTKEKH RMRWVKLASA IDVEVAAASV ASDRPSSNNL SHHSLSSMNI PRAAAAELEE  300
RERSLLAPNN RGRMQEITGA SDVVGFGNGG GYGCDDGNYY CQEQWELGGV VFQQNSGFY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.139350.0ear| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC190734.2_FG003
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in axillary inflorescence primordia, immature internodes below these primordia, and immature husk surrounding these primordia. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:9087405}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC190734.2_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4666460.0AF466646.1 Zea mays putative transposase (Z195D10.1) gene, partial cds; glycyl-tRNA synthetase (Z195D10.2), ornithine carbamoyltransferase (Z195D10.3), putative gag protein (Z195D10.5), putative SET-domain transcriptional regulator (Z195D10.7), putative oxysterol-binding protein (Z195D10.8), putative polyprotein (Z195D10.9), putative oxysterol-binding protein (Z195D10.10), putative gag-pol polyprotein (Z195D10.11), putative phosphatidylinositol-4-phosphate-5-kinase (Z195D10.12), hypothetical protein (Z195D10.15), putative gag-pol polyprotein (Z195D10.16), putative polyprotein (Z195D10.17), putative retrotransposon protein (Z195D10.18), and prpol (Z195D10.19) genes, complete cds; and putative teosinte branched2 (Z195D10.20) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665277.11e-167transcription factor TEOSINTE BRANCHED 1-like
SwissprotQ93WI21e-168TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLA0A1D6GJP60.0A0A1D6GJP6_MAIZE; Putative teosinte branched2
STRINGAC190734.2_FGP0030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Representative plantOGRP1265045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.14e-23TCP domain protein 12
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]
  2. Clark RM,Tavaré S,Doebley J
    Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus.
    Mol. Biol. Evol., 2005. 22(11): p. 2304-12
    [PMID:16079248]