PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC177924.2_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 275aa    MW: 29928.9 Da    PI: 10.2386
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC177924.2_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.2e-092322711155
                        HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         RR++i++++  L++l+P++      K +Ka++L +A+eY k Lq
  AC177924.2_FGP001 232 LRRSKIKEKMKALQSLIPNS-----NKIDKASMLHEAIEYPKTLQ 271
                        6******************7.....5**************88887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.15221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-10231272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10231271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-6232271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.53E-7233271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDSSPPRVSV SMSLSASEAT TAASAEVATT NTEEAPARES SDESSLLARL SVPSARALCS  60
SRDQSTERLL EEDTALVRKK CAEKSASAPR TPPGNRSSGA ARSPRQAKVR GLKRFLSFGR  120
KHKGWEVTVI DCTSTPVPSP AHDASNRWQP ACGSVKRRIG SSNAVFDDTG HGYPIGVKAV  180
EEEQGLGLGA LHEEHISMII YHCSKNSVTK RQTKKSLTAS IYARSIQGYK QLRRSKIKEK  240
MKALQSLIPN SNKIDKASML HEAIEYPKTL QYISF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.41381e-162ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC177924.2_FG001
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC177924.2_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9488551e-159EU948855.1 Zea mays clone 387658 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646360.16e-71PREDICTED: serine/arginine repetitive matrix protein 2-like isoform X3
TrEMBLA0A096PFY00.0A0A096PFY0_MAIZE; Uncharacterized protein
STRINGAC177924.2_FGP0010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.13e-14bHLH family protein