PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC149829.2_FGP004
Common Nameumc1714, ZEAMMB73_240664, Zm.81099
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 87aa    MW: 9776.03 Da    PI: 8.5173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC149829.2_FGP004genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.6e-0713541454
                       HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                       d+iN+ +++L+ llP++s + ++ + s +  L++++ Y+ksL
  AC149829.2_FGP004 13 DEINELISKLQALLPESSrRRNASRSSASKLLKETCAYVKSL 54
                       68**************6647777889**************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.848154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-81373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-81370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-51354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSGGRRGRI SDDEINELIS KLQALLPESS RRRNASRSSA SKLLKETCAY VKSLHREVDD  60
LSERLSGLME TMDNDSPQAE IIRSLLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.810991e-146pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC149829.2_FG004
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC149829.2_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698591e-143EU969859.1 Zea mays clone 336524 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151208.13e-55uncharacterized protein LOC100284841
SwissprotA2XD159e-35ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R479e-35ILI3_ORYSJ; Transcription factor ILI3
TrEMBLB6TXZ43e-55B6TXZ4_MAIZE; DNA binding protein
STRINGAC149829.2_FGP0041e-54(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8216416
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-24bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]