PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015903046.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 555aa    MW: 61385.6 Da    PI: 6.4115
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015903046.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS254.44.2e-781685472374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL  cA+a+++g+ +++q+l+  l+elas++gd+++Rlaa+ ++AL ++l++ s s+++++    + ++ +     ++l  f+evsP++ f +
  XP_015903046.1 168 EQLLNPCATAITAGNPNRVQHLIYVLHELASSTGDANHRLAAHGLRALTHHLSSsSASSCSASEGYVSFTSAEPRFFQKSLLKFYEVSPWFAFPN 262
                     689***************************************************44555555555566665555555555555************ PP

            GRAS  96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg........skeeleetgerLakfAeelgvpfe 177
                      +aN+ Il+ +++e    + +Hi+D ++s+G+QWp+Ll+aL+ R+ ++pp +RiT+++   ++              ++  rL  fA++++++++
  XP_015903046.1 263 NIANSSILQILSEEsdqkRNLHILDVGVSHGVQWPTLLEALTRRAgGPPPLVRITVISGTVNDqktetpfsIGPPGDNLSPRLLGFAKSMNINLQ 357
                     *********999888777889************************55666*******987777555555555556688999************** PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfd 269
                     +n l  ++l++l+ + ++ +p+E+l+V+ +++lh+l    +s+++er+e+Lk+++++ Pk v+++e++a++  ns ++F+++f++ ++y ++++d
  XP_015903046.1 358 INRLDNQSLQELNSQVINSSPDETLIVCAQFRLHHLN---HSSPDERTEFLKALRNMGPKGVILSENNAECscNScGDFATGFSRRVDYLWKFLD 449
                     ***9999*****************************8...67777788******************997664354259***************** PP

            GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                     s+++ +    + r + Er+l++ e+ ++++++ +     +e +ekW er++ aGF    l+e+a +  ++llrk++ ++++r+ee++g + l Wk
  XP_015903046.1 450 STSSAF----KGRESDERRLMEGEAAKALTNRCE----MNEVKEKWCERMRGAGFVGEILGEDAIDGGRALLRKYDnNWEMRMEEKDGYVGLWWK 536
                     **6664....555555566666667777766555....59999*********************************9999*************** PP

            GRAS 364 drpLvsvSaWr 374
                     ++p+ ++S W+
  XP_015903046.1 537 GQPVSFCSLWK 547
                     **********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.564141526IPR005202Transcription factor GRAS
PfamPF035141.5E-75168547IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MTIEEPEPNS ASDHILDWLE DSVSFLPFLD DPYNSGEING YHWWDESQDI THDLINARVA  60
SINSPPAIAT DISTAPANPP ISNHVPSPNS SKKRKASDYP IPKTSRNHQN EKKNQGRRIN  120
QAEDGDVVVA VQEVVPPPKK SGGNKKGTGK ATGNNCNNGN VKEGRWAEQL LNPCATAITA  180
GNPNRVQHLI YVLHELASST GDANHRLAAH GLRALTHHLS SSSASSCSAS EGYVSFTSAE  240
PRFFQKSLLK FYEVSPWFAF PNNIANSSIL QILSEESDQK RNLHILDVGV SHGVQWPTLL  300
EALTRRAGGP PPLVRITVIS GTVNDQKTET PFSIGPPGDN LSPRLLGFAK SMNINLQINR  360
LDNQSLQELN SQVINSSPDE TLIVCAQFRL HHLNHSSPDE RTEFLKALRN MGPKGVILSE  420
NNAECSCNSC GDFATGFSRR VDYLWKFLDS TSSAFKGRES DERRLMEGEA AKALTNRCEM  480
NEVKEKWCER MRGAGFVGEI LGEDAIDGGR ALLRKYDNNW EMRMEEKDGY VGLWWKGQPV  540
SFCSLWKLGI KVDDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-231695476375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015903046.10.0PREDICTED: nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLW9QBW90.0W9QBW9_9R
STRINGVIT_09s0002g01190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein