PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902801.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family LBD
Protein Properties Length: 245aa    MW: 25139.4 Da    PI: 7.7951
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.66.7e-41301301100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_015902801.1  30 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAEL 124
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+++
  XP_015902801.1 125 SYLQAH 130
                     *99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.04629131IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-4030128IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSANPSSSGG GGSSSGSGGC GGGSGGGGGP CGACKFLRRK CVPGCIFAPY FDSEQGAAHF  60
AAVHKVFGAS NVSKLLLHIP VHKRLDAVVT ICYEAQARLR DPVYGCVAHI FALQQQVVNL  120
QAELSYLQAH LATLELPSPP PPPPPTTLVT PPPLTIADLP SASSVPTTYD LSSLFEPMVQ  180
PWVMQQRPMD PRQFGSSTGS SSGTGGSGGG DLHALARELL HRHGSPPHGS MTCPDASSSP  240
SSLSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902801.11e-177PREDICTED: LOB domain-containing protein 18-like
SwissprotO221311e-84LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A067HD701e-115A0A067HD70_CITSI; Uncharacterized protein
TrEMBLV4TY071e-115V4TY07_9R
STRINGVIT_15s0048g00830.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.19e-70LOB domain-containing protein 18