PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family RAV
Protein Properties Length: 300aa    MW: 34486.3 Da    PI: 6.1896
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.72.2e-111360154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                    s++kGV   k +g+W A+I        + k ++lg++ t+eeAa a+++a+ kl 
  XP_015902006.1 13 SRFKGVIALK-SGKWGARISN------TyKPYWLGTYETEEEAAVAYDRAAIKLQ 60
                    6899997667.8******999......33**********************9985 PP

2B360.72.5e-19135252188
                     EEEE-..-HHHHTT-EE--HHH.HTT...............................---.....--SEEEEEETTS-EEEEEE..EEETTEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............................ggkke...esktltledesgrsWevkliyrkksgryvl 61 
                     f+k+lt+sdv  ++ + +pk+fa +h                               +       +s+ lt++d++ rsW++ ++y+++ +++v+
  XP_015902006.1 135 FQKELTHSDVCHKS-FLVPKEFAIQHfpylsgsisgdedvydndeeeeeqgqgqeedE---GmnrTSMRLTFYDKHQRSWTFGYSYWRSTKSFVF 225
                     99*********998.888*****************99999999887777776555553...055599**************************** PP

                     -TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3  62 tkGWkeFvkangLkegDfvvFkldgrs 88 
                     t GW++F k n+Lk +D v+F++  r+
  XP_015902006.1 226 THGWRHFLKMNNLKPKDKVLFYRCARE 252
                     **********************76554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-61359IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-161370IPR016177DNA-binding domain
CDDcd000183.93E-191371No hitNo description
PROSITE profilePS5103216.0281469IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-161469IPR001471AP2/ERF domain
SMARTSM003807.2E-161475IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.0E-24128255IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-18131164IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-18134248No hitNo description
PfamPF023623.0E-17135253IPR003340B3 DNA binding domain
SMARTSM010192.1E-7135267IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-18191249IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.643200268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MESSNNTERG SYSRFKGVIA LKSGKWGARI SNTYKPYWLG TYETEEEAAV AYDRAAIKLQ  60
RSDAPLNFHW TSYSAEECTF QSLHSSEDIL SMIKEKTYST NLKNFISSTK HQQPNEGTPT  120
ASSSNGQGIT HNLLFQKELT HSDVCHKSFL VPKEFAIQHF PYLSGSISGD EDVYDNDEEE  180
EEQGQGQEED EGMNRTSMRL TFYDKHQRSW TFGYSYWRST KSFVFTHGWR HFLKMNNLKP  240
KDKVLFYRCA REDQVEEGKW FYMIEVEKNC SSKAEVEADC IGGGEKGKSK GIMLFGVKID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902006.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
TrEMBLM5WG561e-91M5WG56_PRUPE; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16118910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.16e-41RAV family protein